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9 Article(s) on File
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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
Li XY,
MacArthur S,
Bourgon R,
Nix D,
Pollard DA,
Iyer VN,
Hechmer A,
Simirenko L,
Stapleton M,
Luengo Hendriks CL,
Hou CC,
Ogawa N,
Inwood W,
Sementchenko V,
Beaton A,
Weiszmann R,
Celniker SE,
Knowles DW,
Gingeras T,
Speed TP,
Eisen MB,
Biggin MD

Plos Biology
  6 (2): 0365-0388; 2008  
[Abstract]
[DOI] [Full Text]

Correction: Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm (PLoS Biology (2008) 6,2 (e27) DOI: 10.1371/journal.pbio.0060027)
Li XY,
MacArthur S,
Bourgon R,
Nix D,
Pollard DA,
Iyer VN,
Hechmer A,
Simirenko L,
Stapleton M,
Luengo Hendriks CL,
Hou CC,
Ogawa N,
Inwood W,
Sementchenko V,
Beaton A,
Weiszmann R,
Celniker SE,
Knowles DW,
Gingeras T,
Speed TP,
Eisen MB,
Biggin MD

Plos Biology
  6 (7): 1600; 2008  
[DOI] [Full Text]

RNA maps reveal new RNA classes and a possible function for pervasive transcription
Kapranov P,
Cheng J,
Dike S,
Nix DA,
Duttagupta R,
Willingham AT,
Stadler PF,
Hertel J,
Hackermüller J,
Hofacker IL,
Bell I,
Cheung E,
Drenkow J,
Dumais E,
Patel S,
Helt G,
Ganesh M,
Ghosh S,
Piccolboni A,
Sementchenko V,
Tammana H,
Gingeras TR

Science
  316 (5830): 1484-1488; 2007  
[Abstract]
[DOI]

Biological function of unannotated transcription during the early development of Drosophila melanogaster
Manak JR,
Dike S,
Sementchenko V,
Kapranov P,
Biemar F,
Long J,
Cheng J,
Bell I,
Ghosh S,
Piccolboni A,
Gingeras TR

Nature Genetics
  38 (10): 1151-1158; 2006  
[Abstract]
[DOI] [Full Text]

Transcriptional landscape of the human and fly genomes: Nonlinear and multifunctional modular model of transcriptomes
Willingham AT,
Dike S,
Cheng J,
Manak JR,
Bell I,
Cheung E,
Drenkow J,
Dumais E,
Duttagupta R,
Ganesh M,
Ghosh S,
Helt G,
Nix D,
Piccolboni A,
Sementchenko V,
Tammana H,
Kapranov P,
Gingeras TR

  71 (0): 101-110; 2006  
[Abstract]
[Full Text]

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
Cheng J,
Kapranov P,
Drenkow J,
Dike S,
Brubaker S,
Patel S,
Long J,
Stern D,
Tammana H,
Helt G,
Sementchenko V,
Piccolboni A,
Bekiranov S,
Bailey DK,
Ganesh M,
Ghosh S,
Bell I,
Gerhard DS,
Gingeras TR

Science
  308 (5725): 1149-1154; 2005  
[Abstract]
[DOI]

Global mapping of functionally-important and regulatory regions on human chromosomes 21 and 22 reveal novel regulatory networks in the human genome
Kampa D,
Kapranov P,
Cawley S,
Bekiranov S,
Ng HH,
Sekinger EA,
Piccolboni A,
Sementchenko V,
Cheng J,
Drenkow J,
Yamanaka M,
Patel S,
Brubaker S,
Tammana H,
Narayanan B,
Helt G,
Struhl K,
Gingeras TR

American Journal of Human Genetics
  73 (5): 185-185; Nov 2003  
[Full Text]

Hidden complexities of the human genome revealed by unbiased mapping of transcriptome
Kapranov P,
Cawley S,
Bekiranov S,
Ng HH,
Sekinger EA,
Kampa D,
Piccolboni A,
Sementchenko V,
Cheng J,
Drenkow J,
Yamanaka M,
Patel S,
Brubaker S,
Tammana H,
Narayanan B,
Helt G,
Struhl K,
Gingeras TR

American Journal of Human Genetics
  73 (5): 419-419; Nov 2003  
[Full Text]

Beyond expression profiling: next generation uses of high density oligonucleotide arrays
Kapranov P,
Sementchenko VI,
Gingeras TR

Brief Funct Genomic Proteomic
  2 (1): 47-56; 2003  
[Abstract]
[Full Text]


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