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17 Article(s) on File
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On algorithmic complexity of biomolecular sequence assembly problem
Narzisi G,
Mishra B,
Schatz MC
In:
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
(ed. ) : ; 2014. 8542 : 183-195   Elsevier
[Abstract]
[DOI] [Full Text]

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons
Vezzi F,
Narzisi G,
Mishra B

PLoS ONE
  7 (12): Article no. e52210; Dec 18 2012  
[Abstract]
[Full Text]

TotalReCaller: improved accuracy and performance via integrated alignment and base-calling
Menges F,
Narzisi G,
Mishra B

Bioinformatics
  27 (17): 2330-2337; Sep 1 2011   ISI Web of Science
[Abstract]
[DOI]

Technical perspective: Where biology meets computing
Mishra B

Communications of the ACM
  52 (3): 96; Mar 2009  
[DOI] [Full Text] [PDF]

Mathematical modeling of the formation of apoptosome in intrinsic pathway of apoptosis
Ryu S,
Lin Sc,
Ugel N,
Antoniotti M,
Mishra B

Systems and Synthetic Biology
  2 (1): 49-66; Jun 2008   PMCID: PMC2671592
[Abstract]
[DOI] [Full Text] [PDF]

Validation of S. Pombe sequence assembly by microarray hybridization
West J,
Healy J,
Wigler MH,
Casey W,
Mishra B

J Comput Biol
  13 (1): 1-20; Jan-Feb 2006  
[Abstract]
[DOI] [Full Text] [PDF]

A versatile statistical analysis algorithm to detect genome copy number variation
Daruwala RS,
Rudra A,
Ostrer H,
Lucito R,
Wigler MH,
Mishra B

Proceedings of the National Academy of Sciences of the United States of America
  101 (46): 16292-16297; Nov 2004  
[Abstract]
[DOI] [Full Text]

Distribution of short paired duplications in mammalian genomes
Thomas EE,
Srebro N,
Sebat J,
Navin N,
Healy J,
Mishra B,
Wigler MH

Proc Natl Acad Sci U S A
  101 (28): 10349-54; Jul 13 2004  
[Abstract]
[DOI] [Full Text]

Shrinkage-based similarity metric for cluster analysis of microarray data
Cherepinsky V,
Feng JW,
Rejali M,
Mishra B

Proceedings of the National Academy of Sciences of the United States of America
  100 (17): 9668-9673; Aug 2003  
[Abstract]
[Full Text]

Lifes duplicities: Sex, death, and Valis
Mishra B
In:
High Performance Computing - Hipc 2003
(ed. ) Berlin: Springer-Verlag Berl; 2003. 2913: 1-1  
[Full Text]

Model building and model checking for biochemical processes
Antoniotti M,
Policriti A,
Ugel N,
Mishra B

Cell Biochemistry and Biophysics
  38 (3): 271-286; 2003  
[Abstract]
[Full Text]

A nearly linear-time general algorithm for genome-wide bi-allele haplotype phasing
Casey W,
Mishra B
In:
High Performance Computing - Hipc 2003
(ed. ) Berlin: Springer-Verlag Berl; 2003. 2913: 204-215  
[Abstract]
[Full Text]

Genetics - Wild by nature
Wigler MH,
Mishra B

Science
  296 (5572): 1407-1408; May 2002  
[Full Text]

Comparing genomes
Mishra B

Computing in Science Engineering
  4 (1): 42-49; Jan-Feb 2002  
[Full Text]

A symbolic approach to modeling cellular behavior
Mishra B
In:
High Performance Computing - Hipc 2002, Proceedings
(ed. ) : ; 2002. 2552: 725-732  
[Full Text]

Placing Probes along the Genome Using Pairwise Distance Data
Casey W,
Mishra B,
Wigler MH
In:
Algorithms in Bioinformatics: First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings
(ed. ) Berlin / Heidelberg: Springer-Verlag; 2001. 2149: 52-68  
[Full Text]

Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representations
Lucito R,
West J,
Reiner A,
Alexander J,
Esposito D,
Mishra B,
Powers S,
Norton L,
Wigler MH

Genome Research
  10 (11): 1726-1736; Nov 2000  
[Abstract]
[Full Text]


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