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14 Article(s) on File
Page 1 of 1
DNA Subway: Making genome analysis egalitarian
Hilgert U,
McKay S,
Ghiban C,
Khalfan M,
Micklos D,
Williams J

2014 Annual Conference on Extreme Science and Engineering Discovery Environment, XSEDE 2014;
  Article number 70; Jul 13 2014   Elsevier
[Abstract]
[DOI] [Full Text]

Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function
Verster AJ,
Ramani AK,
McKay SJ,
Fraser AG

PLoS genetics
  10 (2): e1004077; Feb 2014   Nlm
[Abstract]
[DOI] [Full Text]

Using the iplant collaborative discovery environment
Oliver SL,
Lenards AJ,
Barthelson RA,
Merchant N,
McKay SJ

Current protocols in bioinformatics
  (0): 1.22; Jun 2013   NLM
[Abstract]
[DOI] [Full Text]

Phylogenetic analysis with the iPlant discovery environment
Matasci N,
McKay S

Current protocols in bioinformatics
  (0): 6.13.1-6.13.13; Jun 1 2013   NLM
[Abstract]
[DOI] [Full Text]

The taxonomic name resolution service: an online tool for automated standardization of plant names
Boyle B,
Hopkins N,
Lu ZY,
Garay JA,
Mozzherin D,
Rees T,
Matasci N,
Narro ML,
Piel WH,
McKay SJ,
Lowry S,
Freeland C,
Peet RK,
Enquist BJ

BMC Bioinformatics
  14 (0): Jan 16 2013  
[Abstract]
[DOI] [Full Text]

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Gerstein MB,
Lu ZJ,
Van Nostrand EL,
Cheng C,
Arshinoff BI,
Liu T,
Yip KY,
Robilotto R,
Rechtsteiner A,
Ikegami K,
Alves P,
Chateigner A,
Perry M,
Morris M,
Auerbach RK,
Feng X,
Leng J,
Vielle A,
Niu W,
Rhrissorrakrai K,
Agarwal A,
Alexander RP,
Barber G,
Brdlik CM,
Brennan J,
Brouillet JJ,
Carr A,
Cheung MS,
Clawson H,
Contrino S,
Dannenberg LO,
Dernburg AF,
Desai A,
Dick L,
Dose AC,
Du JA,
Egelhofer T,
Ercan S,
Euskirchen G,
Ewing B,
Feingold EA,
Gassmann R,
Good PJ,
Green P,
Gullier F,
Gutwein M,
Guyer MS,
Habegger L,
Han T,
Henikoff JG,
Henz SR,
Hinrichs A,
Holster H,
Hyman T,
Iniguez AL,
Janette J,
Jensen M,
Kato M,
Kent WJ,
Kephart E,
Khivansara V,
Khurana E,
Kim JK,
Kolasinska-Zwierz P,
Lai EC,
Latorre I,
Leahey A,
Lewis S,
Lloyd P,
Lochovsky L,
Lowdon RF,
Lubling Y,
Lyne R,
MacCoss M,
Mackowiak SD,
Mangone M,
McKay SJ,
Mecenas D,
Merrihew G,
Miller DM,
Muroyama A,
Murray JI,
Ooi SL,
Pham H,
Phippen T,
Preston EA,
Rajewsky N,
Ratsch G,
Rosenbaum H,
Rozowsky J,
Rutherford K,
Ruzanov P,
Sarov M,
Sasidharan R,
Sboner A,
Scheid P,
Segal E,
Shin HJ,
Shou C,
Slack FJ,
Slightam C,
Smith R,
Spencer WC,
Stinson EO,
Taing S,
Takasaki T,
Vafeados D,
Voronina K,
Wang GL,
Washington NL,
Whittle CM,
Wu BJ,
Yan KK,
Zeller G,
Zha Z,
Zhong M,
Zhou XL,
Ahringer J,
Strome S,
Gunsalus KC,
Micklem G,
Liu XS,
Reinke V,
Kim SK,
Hillier LW,
Henikoff S,
Piano F,
Snyder M,
Stein LD,
Lieb JD,
Waterston RH

Science
  330 (6012): 1775-1787; Dec 2010   PMC3142569
[Abstract]
[DOI] [Full Text] [PDF]

Using the Generic Synteny Browser (GBrowse_syn)
McKay SJ,
Vergara IA,
Stajich JE

Curr Protoc Bioinformatics
  Chapt (0): Unit 9 12; Sep 2010  
[Abstract]
[DOI] [Full Text]

The transcriptome of the early life history stages of the California Sea Hare Aplysia californica
Fiedler TJ,
Hudder A,
McKay SJ,
Shivkumar S,
Capo TR,
Schmale MC,
Walsh PJ

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics
  5 (2): 165-170; Jun 2010   PMCID: PMC2875295
[Abstract]
[DOI] [Full Text]

An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches
Robinson S,
Tang L,
Mooney B,
McKay SJ,
Clarke W,
Links M,
Karcz S,
Regan S,
Wu Y,
Gruber M,
Cui D,
Yu M,
Parkin I

BMC Plant Biology
  9 (1): 101; Jul 31 2009   PMC3091532
[Abstract]
[DOI] [Full Text] [PDF]

An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans
Meissner B,
Warner A,
Wong K,
Dube N,
Lorch A,
McKay SJ,
Khattra J,
Rogalski T,
Somasiri A,
Chaudhry I,
Fox RM,
Miller Iii DM,
Baillie DL,
Holt RA,
Jones SJ,
Marra MA,
Moerman DG

PLoS Genet
  5 (6): e1000537; Jun 2009   PMCID: PMC2694363
[Abstract]
[DOI] [Full Text] [PDF]

nGASP - the nematode genome annotation assessment project
Coghlan A,
Fiedler TJ,
McKay SJ,
Flicek P,
Harris TW,
Blasiar D,
Stein LD

Bmc Bioinformatics
  9 (1): 549; Dec 19 2008   PMCID: PMC2651883
[Abstract]
[DOI] [Full Text] [PDF]

WormBase 2007
Rogers A,
Antoshechkin I,
Bieri T,
Blasiar D,
Bastiani C,
Canaran P,
Chan J,
Chen WJ,
Davis P,
Fernandes J,
Fiedler TJ,
Han M,
Harris T,
Kishore R,
Lee R,
McKay SJ,
Muller HM,
Nakamura C,
Ozersky P,
Petcherski A,
Schindelman G,
Schwarz EM,
Spooner W,
Tuli MA,
Auken KV,
Wang D,
Wang X,
Williams G,
Yook K,
Durbin R,
Stein LD,
Spieth J,
Sternberg PW

Nucl. Acids Res.
  36 (0): D612-7; Jan 2008   PMCID: PMC2238927
[Abstract]
[DOI] [Full Text] [PDF]

WormBase: new content and better access
Bieri T,
Blasiar D,
Ozersky P,
Antoshechkin I,
Bastiani C,
Canaran P,
Chan J,
Chen N,
Chen WJ,
Davis P,
Fiedler TJ,
Girard LR,
Han M,
Harris TW,
Kishore R,
Lee R,
McKay SJ,
Müller HM,
Nakamura C,
Petcherski A,
Rangarajan A,
Rogers A,
Schindelman G,
Schwarz EM,
Spooner W,
Tuli MA,
Van Auken K,
Wang D,
Wang X,
Williams G,
Durbin R,
Stein LD,
Sternberg PW,
Spieth J

Nucleic Acids Res
  35 (0): D506-D510; Jan 2007   PMCID: PMC1669750
[Abstract]
[DOI] [Full Text] [PDF]

Evolution of duplicated growth hormone genes in autotetraploid salmonid fishes
McKay SJ,
Trautner J,
Smith MJ,
Koop BF,
Devlin RH

Genome
  47 (4): 714-23; Aug 2004  
[Abstract]
[DOI]


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