Cold Spring Harbor Library  CSHL: Home
   Home       Services       Archives       About Us   
 
CSHL Publication List
CSHL Authors Publications
Go back to Search Mode

          
Sort by   in order
15 Article(s) on File
Page 1 of 1
A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
Dharmawardhana P,
Ren L,
Amarasinghe V,
Monaco M,
Thomason J,
Ravenscroft D,
McCouch S,
Ware D,
Jaiswal P

Rice
  6 (1): 1-15; May 29 2013   Elsevier
[Abstract]
[DOI] [Full Text]

Gramene database in 2010: Updates and extensions
Youens-Clark K,
Buckler E,
Casstevens T,
Chen C,
DeClerck G,
Derwent P,
Dharmawardhana P,
Jaiswal P,
Kersey P,
Karthikeyan AS,
Lu J,
McCouch SR,
Ren L,
Spooner W,
Stein JC,
Thomason J,
Wei S,
Ware DH

Nucleic Acids Research
  39 (0): Jan 2011   PMCID: PMC3013721
[Abstract]
[DOI] [Full Text] [PDF]

Gramene QTL database: development, content and applications
Ni J,
Pujar A,
Youens-Clark K,
Yap IV,
Jaiswal P,
Tecle I,
Tung C,
Ren L,
Spooner W,
Wei X,
Avraham S,
Ware DH,
Stein LD,
McCouch S

Database
  2009 (0): bap005; May 12 2009   PMC2790302
[Abstract]
[DOI] [Full Text] [PDF]

A Recommendation for Naming Transcription Factor Proteins in the Grasses
Gray J,
Bevan M,
Brutnell T,
Buell CR,
Cone K,
Hake S,
Jackson DP,
Kellogg E,
Lawrence C,
McCouch S,
Mockler T,
Moose S,
Paterson A,
Peterson T,
Rokshar D,
Souza GM,
Springer N,
Stein N,
Timmermans MC,
Wang G,
Grotewold E

Plant Physiol.
  149 (1): 4-6; Jan 1 2009   PMCID: PMC2613739
[DOI] [Full Text] [PDF]

Gramene: a growing plant comparative genomics resource
Liang C,
Jaiswal P,
Hebbard C,
Avraham S,
Buckler ES,
Casstevens T,
Hurwitz BL,
McCouch S,
Ni J,
Pujar A,
Ravenscroft D,
Ren L,
Spooner W,
Tecle I,
Thomason J,
Tung CW,
Wei X,
Yap I,
Youens-Clark K,
Ware DH,
Stein LD

Nucleic Acids Res
  36 (0): D947-53; Jan 2008   PMCID: PMC2238951
[Abstract]
[DOI] [Full Text] [PDF]

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
Avraham S,
Tung CW,
Ilic K,
Jaiswal P,
Kellogg EA,
McCouch S,
Pujar A,
Reiser L,
Rhee SY,
Sachs MM,
Schaeffer M,
Stein LD,
Stevens P,
Vincent L,
Zapata F,
Ware DH

Nucleic Acids Res
  36 (0): D449-54; Jan 2008   PMCID: PMC2238838
[Abstract]
[DOI] [Full Text] [PDF]

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant
Ilic K,
Kellogg EA,
Jaiswal P,
Zapata F,
Stevens PF,
Vincent LP,
Avraham S,
Reiser L,
Pujar A,
Sachs MM,
Whitman NT,
McCouch SR,
Schaeffer ML,
Ware DH,
Stein LD,
Rhee SY

Plant Physiology
  143 (2): 587-599; Feb 2007  
[DOI] [Full Text] [PDF]

The map-based sequence of the rice genome
Matsumoto T,
Wu JZ,
Kanamori H,
Katayose Y,
Fujisawa M,
Namiki N,
Mizuno H,
Yamamoto K,
Antonio BA,
Baba T,
Sakata K,
Nagamura Y,
Aoki H,
Arikawa K,
Arita K,
Bito T,
Chiden Y,
Fujitsuka N,
Fukunaka R,
Hamada M,
Harada C,
Hayashi A,
Hijishita S,
Honda M,
Hosokawa S,
Ichikawa Y,
Idonuma A,
Iijima M,
Ikeda M,
Ikeno M,
Ito K,
Ito S,
Ito T,
Ito Y,
Iwabuchi A,
Kamiya K,
Karasawa W,
Kurita K,
Katagiri S,
Kikuta A,
Kobayashi H,
Kobayashi N,
Machita K,
Maehara T,
Masukawa M,
Mizubayashi T,
Mukai Y,
Nagasaki H,
Nagata Y,
Naito S,
Nakashima M,
Nakama Y,
Nakamichi Y,
Nakamura M,
Meguro A,
Negishi M,
Ohta I,
Ohta T,
Okamoto M,
Ono N,
Saji S,
Sakaguchi M,
Sakai K,
Shibata M,
Shimokawa T,
Song JY,
Takazaki Y,
Terasawa K,
Tsugane M,
Tsuji K,
Ueda S,
Waki K,
Yamagata H,
Yamamoto M,
Yamamoto S,
Yamane H,
Yoshiki S,
Yoshihara R,
Yukawa K,
Zhong HS,
Yano M,
Sasaki T,
Yuan QP,
Shu OT,
Liu J,
Jones KM,
Gansberger K,
Moffat K,
Hill J,
Bera J,
Fadrosh D,
Jin SH,
Johri S,
Kim M,
Overton L,
Reardon M,
Tsitrin T,
Vuong H,
Weaver B,
Ciecko A,
Tallon L,
Jackson J,
Pai G,
Van Aken S,
Utterback T,
Reidmuller S,
Feldblyum T,
Hsiao J,
Zismann V,
Iobst S,
de Vazeille AR,
Buell CR,
Ying K,
Li Y,
Lu TT,
Huang YC,
Zhao Q,
Feng Q,
Zhang L,
Zhu JJ,
Weng QJ,
Mu J,
Lu YQ,
Fan DL,
Liu YL,
Guan JP,
Zhang YJ,
Yu SL,
Liu XH,
Zhang Y,
Hong GF,
Han B,
Choisne N,
Demange N,
Orjeda G,
Samain S,
Cattolico L,
Pelletier E,
Couloux A,
Segurens B,
Wincker P,
DHont A,
Scarpelli C,
Weissenbach J,
Salanoubat M,
Quetier F,
Yu Y,
Kim HR,
Rambo T,
Currie J,
Collura K,
Luo MZ,
Yang TJ,
Ammiraju JS,
Engler F,
Soderlund C,
Wing RA,
Palmer LE,
de la Bastide M,
Spiegel L,
Nascimento L,
Zutavern T,
OShaughnessy A,
Dike S,
Dedhia N,
Preston R,
Balija V,
McCombie WR,
Chow TY,
Chen HH,
Chung MC,
Chen CS,
Shaw JF,
Wu HP,
Hsiao KJ,
Chao YT,
Chu MK,
Cheng CH,
Hour AL,
Lee PF,
Lin SJ,
Lin YC,
Liou JY,
Liu SM,
Hsing YI,
Raghuvanshi S,
Mohanty A,
Bharti AK,
Gaur A,
Gupta V,
Kumar D,
Ravi V,
Vij S,
Kapur A,
Khurana P,
Khurana JP,
Tyagi AK,
Gaikwad K,
Singh A,
Dalal V,
Srivastava S,
Dixit A,
Pal AK,
Ghazi IA,
Yadav M,
Pandit A,
Bhargava A,
Sureshbabu K,
Batra K,
Sharma TR,
Mohapatra T,
Singh NK,
Messing J,
Nelson AB,
Fuks G,
Kavchok S,
Keizer G,
Llaca EL,
Song RT,
Tanyolac B,
Young S,
Il KH,
Hahn JH,
Sangsakoo G,
Vanavichit A,
de Mattos LA,
Zimmer PD,
Malone G,
Dellagostin O,
de Oliveira AC,
Bevan M,
Bancroft I,
Minx P,
Cordum H,
Wilson R,
Cheng ZK,
Jin WW,
Jiang JM,
Leong SA,
Iwama H,
Gojobori T,
Itoh T,
Niimura Y,
Fujii Y,
Habara T,
Sakai H,
Sato Y,
Wilson G,
Kumar K,
McCouch S,
Juretic N,
Hoen D,
Wright S,
Bruskiewich R,
Bureau T,
Miyao A,
Hirochika H,
Nishikawa T

Nature
  436 (7052): 793-800; Aug 2005  
[Abstract]
[DOI] [Full Text] [PDF]

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages
Jaiswal P,
Avraham S,
Ilic K,
Kellogg EA,
McCouch S,
Pujar A,
Reiser L,
Rhee SY,
Sachs MM,
Schaeffer M,
Stein L,
Stevens P,
Vincent L,
Ware D,
Zapata F

Comp Funct Genomics
  6 (7): 388-97; 2005   PMCID: PMC2447502
[Abstract]
[DOI] [Full Text] [PDF]

Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement)
McCouch SR,
Teytelman L,
Xu Y,
Lobos KB,
Clare K,
Walton M,
Fu B,
Maghirang R,
Li Z,
Xing Y,
Zhang QS,
Kono I,
Yano M,
Fjellstrom R,
DeClerck G,
Schneider D,
Cartinhour S,
Ware D,
Stein L

DNA Res
  9 (6): 257-79; Dec 31 2002  
[Full Text] [PDF]

Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.)
McCouch SR,
Teytelman L,
Xu YB,
Lobos KB,
Clare K,
Walton M,
Fu BY,
Maghirang R,
Li ZK,
Xing YZ,
Zhang QF,
Kono I,
Yano M,
Fjellstrom R,
DeClerck G,
Schneider D,
Cartinhour S,
Ware D,
Stein L

DNA Research
  9 (6): 199-207; Dec 2002  
[DOI] [Full Text] [PDF]

Gramene, a tool for grass Genomics
Ware DH,
Jaiswal PJ,
Ni JJ,
Yap I,
Pan XK,
Clark KY,
Teytelman L,
Schmidt SC,
Zhao W,
Chang K,
Cartinhour S,
Stein LD,
McCouch SR

Plant Physiology
  130 (4): 1606-1613; Dec 2002  
[Abstract]
[DOI] [Full Text]

Gramene: development and integration of trait and gene ontologies for rice
Jaiswal P,
Ware D,
Ni JJ,
Chang K,
Zhao W,
Schmidt S,
Pan XK,
Clark K,
Teytelman L,
Cartinhour S,
Stein L,
McCouch S

Comparative and Functional Genomics
  3 (2): 132-136; Apr 2002  
[Full Text]

The Plant Ontology (TM) Consortium and plant ontologies
Bruskiewich R,
Coe EH,
Jaiswal P,
McCouch S,
Polacco M,
Stein L,
Vincent L,
Ware D

Comparative and Functional Genomics
  3 (2): 137-142; Apr 2002  
[Full Text]

Gramene: a resource for comparative grass genomics
Ware D,
Jaiswal P,
Ni JJ,
Pan XK,
Chang K,
Clark K,
Teytelman L,
Schmidt S,
Zhao W,
Cartinhour S,
McCouch S,
Stein L

Nucleic Acids Research
  30 (1): 103-105; Jan 2002  
[Full Text]


Page 1 of 1

Go back to Search Mode


Last Updated: September, 2017
Most Recent Publications: Jan 13, 2015

© 2012   CSHL Library and Archives   1 Bungtown Rd.   Cold Spring Harbor, NY 11724   Library Information 516-367-6872
CSHL Home Intranet