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11 Article(s) on File
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SeqHBase: a big data toolset for family based sequencing data analysis
He M,
Person TN,
Hebbring SJ,
Heinzen E,
Ye Z,
Schrodi SJ,
McPherson EW,
Lin SM,
Peissig PL,
Brilliant MH,
ORawe J,
Robison RJ,
Lyon GJ,
Wang K

J Med Genet
  (0): Jan 13 2015   Nlm
[Abstract]
[DOI] [Full Text]

Comparison of the transcriptional landscapes between human and mouse tissues
Lin S,
Lin Y,
Nery JR,
Urich MA,
Breschi A,
Davis CA,
Dobin A,
Zaleski C,
Beer MA,
Chapman WC,
Gingeras TR,
Ecker JR,
Snyder MP

Proceedings of the National Academy of Sciences of the United States of America
  111 (48): 17224-17229; Nov 20 2014  
[Abstract]
[DOI] [Full Text]

A comparative encyclopedia of DNA elements in the mouse genome
Yue F,
Cheng Y,
Breschi A,
Vierstra J,
Wu W,
Ryba T,
Sandstrom R,
Ma Z,
Davis C,
Pope BD,
Shen Y,
Pervouchine DD,
Djebali S,
Thurman RE,
Kaul R,
Rynes E,
Kirilusha A,
Marinov GK,
Williams BA,
Trout D,
Amrhein H,
Fisher-Aylor K,
Antoshechkin I,
DeSalvo G,
See LH,
Fastuca M,
Drenkow J,
Zaleski C,
Dobin A,
Prieto P,
Lagarde J,
Bussotti G,
Tanzer A,
Denas O,
Li K,
Bender MA,
Zhang M,
Byron R,
Groudine MT,
McCleary D,
Pham L,
Ye Z,
Kuan S,
Edsall L,
Wu YC,
Rasmussen MD,
Bansal MS,
Kellis M,
Keller CA,
Morrissey CS,
Mishra T,
Jain D,
Dogan N,
Harris RS,
Cayting P,
Kawli T,
Boyle AP,
Euskirchen G,
Kundaje A,
Lin S,
Lin Y,
Jansen C,
Malladi VS,
Cline MS,
Erickson DT,
Kirkup VM,
Learned K,
Sloan CA,
Rosenbloom KR,
Lacerda de Sousa B,
Beal K,
Pignatelli M,
Flicek P,
Lian J,
Kahveci T,
Lee D,
Kent WJ,
Ramalho Santos M,
Herrero J,
Notredame C,
Johnson A,
Vong S,
Lee K,
Bates D,
Neri F,
Diegel M,
Canfield T,
Sabo PJ,
Wilken MS,
Reh TA,
Giste E,
Shafer A,
Kutyavin T,
Haugen E,
Dunn D,
Reynolds AP,
Neph S,
Humbert R,
Hansen RS,
De Bruijn M,
Selleri L,
Rudensky A,
Josefowicz S,
Samstein R,
Eichler EE,
Orkin SH,
Levasseur D,
Papayannopoulou T,
Chang KH,
Skoultchi A,
Gosh S,
Disteche C,
Treuting P,
Wang Y,
Weiss MJ,
Blobel GA,
Cao X,
Zhong S,
Wang T,
Good PJ,
Lowdon RF,
Adams LB,
Zhou XQ,
Pazin MJ,
Feingold EA,
Wold B,
Taylor J,
Mortazavi A,
Weissman SM,
Stamatoyannopoulos JA,
Snyder MP,
Guigo R,
Gingeras TR,
Gilbert DM,
Hardison RC,
Beer MA,
Ren B

Nature
  515 (7527): 355-64; Nov 20 2014   Nlm
[Abstract]
[DOI] [Full Text]

The tomato genome sequence provides insights into fleshy fruit evolution
Sato S,
Tabata S,
Hirakawa H,
Asamizu E,
Shirasawa K,
Isobe S,
Kaneko T,
Nakamura Y,
Shibata D,
Aoki K,
Egholm M,
Knight J,
Bogden R,
Li CB,
Shuang Y,
Xu X,
Pan SK,
Cheng SF,
Liu X,
Ren YY,
Wang J,
Albiero A,
Dal Pero F,
Todesco S,
Van Eck J,
Buels RM,
Bombarely A,
Gosselin JR,
Huang MY,
Leto JA,
Menda N,
Strickler S,
Mao LY,
Gao S,
Tecle IY,
York T,
Zheng Y,
Vrebalov JT,
Lee J,
Zhong SL,
Mueller LA,
Stiekema WJ,
Ribeca P,
Alioto T,
Yang WC,
Huang SW,
Du YC,
Zhang ZH,
Gao JC,
Guo YM,
Wang XX,
Li Y,
He J,
Li CY,
Cheng ZK,
Zuo JR,
Ren JF,
Zhao JH,
Yan LH,
Jiang HL,
Wang B,
Li HS,
Li ZJ,
Fu FY,
Chen BT,
Han B,
Feng Q,
Fan DL,
Wang Y,
Ling HQ,
Xue YB,
Ware D,
McCombie WR,
Lippman ZB,
Chia JM,
Jiang K,
Pasternak S,
Gelley L,
Kramer M,
Anderson LK,
Chang SB,
Royer SM,
Shearer LA,
Stack SM,
Rose JK,
Xu YM,
Eannetta N,
Matas AJ,
McQuinn R,
Tanksley SD,
Camara F,
Guigo R,
Rombauts S,
Fawcett J,
Van de Peer Y,
Zamir D,
Liang CB,
Spannagl M,
Gundlach H,
Bruggmann R,
Mayer K,
Jia ZQ,
Zhang JH,
Ye ZB,
Bishop GJ,
Butcher S,
Lopez-Cobollo R,
Buchan D,
Filippis I,
Abbott J,
Dixit R,
Singh M,
Singh A,
Pal JK,
Pandit A,
Singh PK,
Mahato AK,
Dogra V,
Gaikwad K,
Sharma TR,
Mohapatra T,
Singh NK,
Causse M,
Rothan C,
Schiex T,
Noirot C,
Bellec A,
Klopp C,
Delalande C,
Berges H,
Mariette J,
Frasse P,
Vautrin S,
Zouine M,
Latche A,
Rousseau C,
Regad F,
Pech JC,
Philippot M,
Bouzayen M,
Pericard P,
Osorio S,
del Carmen AF,
Monforte A,
Granell A,
Fernandez-Munoz R,
Conte M,
Lichtenstein G,
Carrari F,
De Bellis G,
Fuligni F,
Peano C,
Grandillo S,
Termolino P,
Pietrella M,
Fantini E,
Falcone G,
Fiore A,
Giuliano G,
Lopez L,
Facella P,
Perrotta G,
Daddiego L,
Bryan G,
Orozco M,
Pastor X,
Torrents D,
van Schriek K,
Feron RM,
van Oeveren J,
de Heer P,
daPonte L,
Jacobs-Oomen S,
Cariaso M,
Prins M,
van Eijk MJ,
Janssen A,
van Haaren MJ,
Jo SH,
Kim J,
Kwon SY,
Kim S,
Koo DH,
Lee S,
Hur CG,
Clouser C,
Rico A,
Hallab A,
Gebhardt C,
Klee K,
Jocker A,
Warfsmann J,
Gobel U,
Kawamura S,
Yano K,
Sherman JD,
Fukuoka H,
Negoro S,
Bhutty S,
Chowdhury P,
Chattopadhyay D,
Datema E,
Smit S,
Schijlen EW,
van de Belt J,
van Haarst JC,
Peters SA,
van Staveren MJ,
Henkens MH,
Mooyman PJ,
Hesselink T,
van Ham R,
Jiang GY,
Droege M,
Choi D,
Kang BC,
Kim BD,
Park M,
Yeom SI,
Lee YH,
Choi YD,
Li GC,
Gao JW,
Liu YS,
Huang SX,
Fernandez-Pedrosa V,
Collado C,
Zuniga S,
Wang GP,
Cade R,
Dietrich RA,
Rogers J,
Knapp S,
Fei ZJ,
White RA,
Thannhauser TW,
Giovannoni JJ,
Botella MA,
Gilbert L,
Gonzalez R,
Goicoechea JL,
Yu Y,
Kudrna D,
Collura K,
Wissotski M,
Wing R,
Schoof H,
Meyers BC,
Gurazada AB,
Green PJ,
Mathur S,
Vyas S,
Solanke AU,
Kumar R,
Gupta V,
Sharma AK,
Khurana P,
Khurana JP,
Tyagi AK,
Dalmay T,
Mohorianu I,
Walts B,
Chamala S,
Barbazuk WB,
Li JP,
Guo H,
Lee TH,
Wang YP,
Zhang D,
Paterson AH,
Wang XY,
Tang HB,
Barone A,
Chiusano ML,
Ercolano MR,
DAgostino N,
Di Filippo M,
Traini A,
Sanseverino W,
Frusciante L,
Seymour GB,
Elharam M,
Fu Y,
Hua A,
Kenton S,
Lewis J,
Lin SP,
Najar F,
Lai HS,
Qin BF,
Qu CM,
Shi RH,
White D,
White J,
Xing YB,
Yang KQ,
Yi J,
Yao ZY,
Zhou LP,
Roe BA,
Vezzi A,
DAngelo M,
Zimbello R,
Schiavon R,
Caniato E,
Rigobello C,
Campagna D,
Vitulo N,
Valle G,
Nelson DR,
De Paoli E,
Szinay D,
de Jong HH,
Bai YL,
Visser RG,
Lankhorst RM,
Beasley H,
McLaren K,
Nicholson C,
Riddle C,
Gianese G

Nature
  485 (7400): 635-641; May 2012  
[Abstract]
[DOI] [Full Text]

Moving AHEAD with an international human epigenome project
Jones PA,
Archer TK,
Baylin SB,
Beck S,
Berger S,
Bernstein BE,
Carpten JD,
Clark SJ,
Costello JF,
Doerge RW,
Esteller M,
Feinberg AP,
Gingeras TR,
Greally JM,
Henikoff S,
Herman JG,
Jackson-Grusby L,
Jenuwein T,
Jirtle RL,
Kim YJ,
Laird PW,
Lim B,
Martienssen R,
Polyak K,
Stunnenberg H,
Tlsty TD,
Tycko B,
Ushijima T,
Zhu JD,
Pirrotta V,
Allis CD,
Elgin SC,
Rine J,
Wu C,
Amer Assoc Canc Res ,
European Union Netwo

Nature
  454 (7205): 711-715; Aug 7 2008  
[DOI] [Full Text]

Mathematical modeling of the formation of apoptosome in intrinsic pathway of apoptosis
Ryu S,
Lin Sc,
Ugel N,
Antoniotti M,
Mishra B

Systems and Synthetic Biology
  2 (1): 49-66; Jun 2008   PMCID: PMC2671592
[Abstract]
[DOI] [Full Text] [PDF]

A second generation human haplotype map of over 3.1 million SNPs
Frazer KA,
Ballinger DG,
Cox DR,
Hinds DA,
Stuve LL,
Gibbs RA,
Belmont JW,
Boudreau A,
Hardenbol P,
Leal SM,
Pasternak S,
Wheeler DA,
Willis TD,
Yu FL,
Yang HM,
Zeng CQ,
Gao Y,
Hu HR,
Hu WT,
Li CH,
Lin W,
Liu SQ,
Pan H,
Tang XL,
Wang J,
Wang W,
Yu J,
Zhang B,
Zhang QR,
Zhao HB,
Zhao H,
Zhou J,
Gabriel SB,
Barry R,
Blumenstiel B,
Camargo A,
Defelice M,
Faggart M,
Goyette M,
Gupta S,
Moore J,
Nguyen H,
Onofrio RC,
Parkin M,
Roy J,
Stahl E,
Winchester E,
Ziaugra L,
Altshuler D,
Shen Y,
Yao ZJ,
Huang W,
Chu X,
He YG,
Jin L,
Liu YF,
Shen YY,
Sun WW,
Wang HF,
Wang Y,
Xiong XY,
Xu L,
Waye MM,
Tsui SK,
Wong JT,
Galver LM,
Fan JB,
Gunderson K,
Murray SS,
Oliphant AR,
Chee MS,
Montpetit A,
Chagnon F,
Ferretti V,
Leboeuf M,
Olivier JF,
Phillips MS,
Roumy S,
Sallee C,
Verner A,
Hudson TJ,
Kwok PY,
Cai DM,
Koboldt DC,
Miller RD,
Pawlikowska L,
Taillon-Miller P,
Xiao M,
Tsui LC,
Mak W,
Song YQ,
Tam PK,
Nakamura Y,
Kawaguchi T,
Kitamoto T,
Morizono T,
Nagashima A,
Ohnishi Y,
Sekine A,
Tanaka T,
Tsunoda T,
Deloukas P,
Bird CP,
Delgado M,
Dermitzakis ET,
Gwilliam R,
Hunt S,
Morrison J,
Powell D,
Stranger BE,
Whittaker P,
Bentley DR,
Daly MJ,
de Bakker PI,
Barrett J,
Chretien YR,
Maller J,
McCarroll S,
Patterson N,
Peer I,
Price A,
Purcell S,
Richter DJ,
Sabeti P,
Saxena R,
Schaffner SF,
Sham PC,
Varilly P,
Stein LD,
Krishnan L,
Smith AV,
Tello-Ruiz MK,
Thorisson GA,
Chakravarti A,
Chen PE,
Cutler DJ,
Kashuk CS,
Lin S,
Abecasis GR,
Guan WH,
Li Y,
Munro HM,
Qin ZH,
Thomas DJ,
McVean G,
Auton A,
Bottolo L,
Cardin N,
Eyheramendy S,
Freeman C,
Marchini J,
Myers S,
Spencer C,
Stephens M,
Donnelly P,
Cardon LR,
Clarke G,
Evans DM,
Morris AP,
Weir BS,
Johnson TA,
Mullikin JC

Nature
  449 (7164): 851-U3; Oct 2007  
[Abstract]
[DOI] [Full Text] [PDF]

A highly conserved regulatory element controls hematopoietic expression of GATA-2 in zebrafish
Yang Z,
Jiang H,
Zhao F,
Shankar DB,
Sakamoto KM,
Zhang MQ,
Lin S

Bmc Developmental Biology
  7 (0): Aug 2007  
[DOI] [Full Text] [PDF]

The map-based sequence of the rice genome
Matsumoto T,
Wu JZ,
Kanamori H,
Katayose Y,
Fujisawa M,
Namiki N,
Mizuno H,
Yamamoto K,
Antonio BA,
Baba T,
Sakata K,
Nagamura Y,
Aoki H,
Arikawa K,
Arita K,
Bito T,
Chiden Y,
Fujitsuka N,
Fukunaka R,
Hamada M,
Harada C,
Hayashi A,
Hijishita S,
Honda M,
Hosokawa S,
Ichikawa Y,
Idonuma A,
Iijima M,
Ikeda M,
Ikeno M,
Ito K,
Ito S,
Ito T,
Ito Y,
Iwabuchi A,
Kamiya K,
Karasawa W,
Kurita K,
Katagiri S,
Kikuta A,
Kobayashi H,
Kobayashi N,
Machita K,
Maehara T,
Masukawa M,
Mizubayashi T,
Mukai Y,
Nagasaki H,
Nagata Y,
Naito S,
Nakashima M,
Nakama Y,
Nakamichi Y,
Nakamura M,
Meguro A,
Negishi M,
Ohta I,
Ohta T,
Okamoto M,
Ono N,
Saji S,
Sakaguchi M,
Sakai K,
Shibata M,
Shimokawa T,
Song JY,
Takazaki Y,
Terasawa K,
Tsugane M,
Tsuji K,
Ueda S,
Waki K,
Yamagata H,
Yamamoto M,
Yamamoto S,
Yamane H,
Yoshiki S,
Yoshihara R,
Yukawa K,
Zhong HS,
Yano M,
Sasaki T,
Yuan QP,
Shu OT,
Liu J,
Jones KM,
Gansberger K,
Moffat K,
Hill J,
Bera J,
Fadrosh D,
Jin SH,
Johri S,
Kim M,
Overton L,
Reardon M,
Tsitrin T,
Vuong H,
Weaver B,
Ciecko A,
Tallon L,
Jackson J,
Pai G,
Van Aken S,
Utterback T,
Reidmuller S,
Feldblyum T,
Hsiao J,
Zismann V,
Iobst S,
de Vazeille AR,
Buell CR,
Ying K,
Li Y,
Lu TT,
Huang YC,
Zhao Q,
Feng Q,
Zhang L,
Zhu JJ,
Weng QJ,
Mu J,
Lu YQ,
Fan DL,
Liu YL,
Guan JP,
Zhang YJ,
Yu SL,
Liu XH,
Zhang Y,
Hong GF,
Han B,
Choisne N,
Demange N,
Orjeda G,
Samain S,
Cattolico L,
Pelletier E,
Couloux A,
Segurens B,
Wincker P,
DHont A,
Scarpelli C,
Weissenbach J,
Salanoubat M,
Quetier F,
Yu Y,
Kim HR,
Rambo T,
Currie J,
Collura K,
Luo MZ,
Yang TJ,
Ammiraju JS,
Engler F,
Soderlund C,
Wing RA,
Palmer LE,
de la Bastide M,
Spiegel L,
Nascimento L,
Zutavern T,
OShaughnessy A,
Dike S,
Dedhia N,
Preston R,
Balija V,
McCombie WR,
Chow TY,
Chen HH,
Chung MC,
Chen CS,
Shaw JF,
Wu HP,
Hsiao KJ,
Chao YT,
Chu MK,
Cheng CH,
Hour AL,
Lee PF,
Lin SJ,
Lin YC,
Liou JY,
Liu SM,
Hsing YI,
Raghuvanshi S,
Mohanty A,
Bharti AK,
Gaur A,
Gupta V,
Kumar D,
Ravi V,
Vij S,
Kapur A,
Khurana P,
Khurana JP,
Tyagi AK,
Gaikwad K,
Singh A,
Dalal V,
Srivastava S,
Dixit A,
Pal AK,
Ghazi IA,
Yadav M,
Pandit A,
Bhargava A,
Sureshbabu K,
Batra K,
Sharma TR,
Mohapatra T,
Singh NK,
Messing J,
Nelson AB,
Fuks G,
Kavchok S,
Keizer G,
Llaca EL,
Song RT,
Tanyolac B,
Young S,
Il KH,
Hahn JH,
Sangsakoo G,
Vanavichit A,
de Mattos LA,
Zimmer PD,
Malone G,
Dellagostin O,
de Oliveira AC,
Bevan M,
Bancroft I,
Minx P,
Cordum H,
Wilson R,
Cheng ZK,
Jin WW,
Jiang JM,
Leong SA,
Iwama H,
Gojobori T,
Itoh T,
Niimura Y,
Fujii Y,
Habara T,
Sakai H,
Sato Y,
Wilson G,
Kumar K,
McCouch S,
Juretic N,
Hoen D,
Wright S,
Bruskiewich R,
Bureau T,
Miyao A,
Hirochika H,
Nishikawa T

Nature
  436 (7052): 793-800; Aug 2005  
[Abstract]
[DOI] [Full Text] [PDF]

eor-1 and eor-2 are required for cell-specific apoptotic death in C. elegans
Hoeppner DJ,
Spector MS,
Ratliff TM,
Kinchen JM,
Granat S,
Lin SC,
Bhusri SS,
Conradt B,
Herman MA,
Hengartner MO

Dev Biol
  274 (1): 125-38; Oct 1 2004  
[Abstract]
[DOI]

Purification and characterization of human cell--cell adhesion molecule 1 (C-CAM1) expressed in insect cells
Phan D,
Han E,
Birrell G,
Bonnal S,
Duggan L,
Esumi N,
Gutstein H,
Li R,
Lopato S,
Manogaran A,
Pollak ES,
Ray A,
Reddi PP,
Reichert AS,
Struffi P,
Tiscornia G,
Ximenez-Fyvie LA,
Zhang H,
Lin SH

Protein Expr Purif
  21 (2): 343-51; Mar 2001  
[Abstract]
[DOI] [Full Text]


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