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6 Article(s) on File
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The developmental transcriptome of Drosophila melanogaster
Graveley BR,
Brooks AN,
Carlson J,
Duff MO,
Landolin JM,
Yang L,
Artieri CG,
van Baren MJ,
Boley N,
Booth BW,
Brown JB,
Cherbas L,
Davis CA,
Dobin A,
Li RH,
Lin W,
Malone JH,
Mattiuzzo NR,
Miller D,
Sturgill D,
Tuch BB,
Zaleski C,
Zhang DY,
Blanchette M,
Dudoit S,
Eads B,
Green RE,
Hammonds A,
Jiang LC,
Kapranov P,
Langton L,
Perrimon N,
Sandler JE,
Wan KH,
Willingham A,
Zhang Y,
Zou Y,
Andrews J,
Bickel PJ,
Brenner SE,
Brent MR,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Oliver B,
Celniker SE

Nature
  471 (7339): 473-479; Mar 2011   ISI PMC3075879
[Abstract]
[DOI]

The transcriptional diversity of 25 Drosophila cell lines
Cherbas L,
Willingham A,
Zhang D,
Yang L,
Zou Y,
Eads BD,
Carlson JW,
Landolin JM,
Kapranov P,
Dumais J,
Samsonova A,
Choi JH,
Roberts J,
Davis CA,
Tang H,
Van Baren MJ,
Ghosh S,
Dobin A,
Bell KG,
Lin W,
Langton L,
Duff MO,
Tenney AE,
Zaleski C,
Brent MR,
Hoskins RA,
Kaufman TC,
Andrews J,
Graveley BR,
Perrimon N,
Celniker SE,
Gingeras TR,
Cherbas P

Genome Research
  21 (2): 301-314; 2011   Elsevier PMC3032933
[Abstract]
[DOI]

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Roy S,
Ernst J,
Kharchenko PV,
Kheradpour P,
Negre N,
Eaton ML,
Landolin JM,
Bristow CA,
Ma LJ,
Lin MF,
Washietl S,
Arshinoff BI,
Ay F,
Meyer PE,
Robine N,
Washington NL,
Di Stefano L,
Berezikov E,
Brown CD,
Candeias R,
Carlson JW,
Carr A,
Jungreis I,
Marbach D,
Sealfon R,
Tolstorukov MY,
Will S,
Alekseyenko AA,
Artieri C,
Booth BW,
Brooks AN,
Dai Q,
Davis CA,
Duff MO,
Feng X,
Gorchakov AA,
Gu TT,
Henikoff JG,
Kapranov P,
Li RH,
MacAlpine HK,
Malone J,
Minoda A,
Nordman J,
Okamura K,
Perry M,
Powell SK,
Riddle NC,
Sakai A,
Samsonova A,
Sandler JE,
Schwartz YB,
Sher N,
Spokony R,
Sturgill D,
van Baren M,
Wan KH,
Yang L,
Yu C,
Feingold E,
Good P,
Guyer M,
Lowdon R,
Ahmad K,
Andrews J,
Berger B,
Brenner SE,
Brent MR,
Cherbas L,
Elgin SC,
Gingeras TR,
Grossman R,
Hoskins RA,
Kaufman TC,
Kent W,
Kuroda MI,
Orr-Weaver T,
Perrimon N,
Pirrotta V,
Posakony JW,
Ren B,
Russell S,
Cherbas P,
Graveley BR,
Lewis S,
Micklem G,
Oliver B,
Park PJ,
Celniker SE,
Henikoff S,
Karpen GH,
Lai EC,
MacAlpine DM,
Stein LD,
White KP,
Kellis M

Science
  330 (6012): 1787-1797; Dec 2010   PMC3192495
[Abstract]
[DOI] [Full Text] [PDF]

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale
Bohland JW,
Wu C,
Barbas H,
Bokil H,
Bota M,
Breiter HC,
Cline HT,
Doyle JC,
Freed PJ,
Greenspan RJ,
Haber SN,
Hawrylycz M,
Herrera DG,
Hilgetag CC,
Huang ZJ,
Jones A,
Jones EG,
Karten HJ,
Kleinfeld D,
Kotter R,
Lester HA,
Lin JM,
Mensh BD,
Mikula S,
Panksepp J,
Price JL,
Safdieh J,
Saper CB,
Schiff ND,
Schmahmann JD,
Stillman B,
Svoboda K,
Swanson LW,
Toga AW,
Van Essen DC,
Watson JD,
Mitra PP

PLoS Comput Biol
  5 (3): e1000334; Mar 2009   PMCID: PMC2655718
[Abstract]
[DOI] [Full Text] [PDF]

An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006
Lin JM,
Bohland JW,
Andrews P,
Burns GA,
Allen CB,
Mitra PP

PLoS ONE
  3 (4): e2052; Apr 2008   PMCID: PMC2324197
[Abstract]
[DOI] [Full Text] [PDF]

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney E,
Stamatoyannopoulos JA,
Dutta A,
Guigó R,
Gingeras TR,
Margulies EH,
Weng Z,
Snyder M,
Dermitzakis ET,
Thurman RE,
Kuehn MS,
Taylor CM,
Neph S,
Koch CM,
Asthana S,
Malhotra A,
Adzhubei I,
Greenbaum JA,
Andrews RM,
Flicek P,
Boyle PJ,
Cao H,
Carter NP,
Clelland GK,
Davis S,
Day N,
Dhami P,
Dillon SC,
Dorschner MO,
Fiegler H,
Giresi PG,
Goldy J,
Hawrylycz M,
Haydock A,
Humbert R,
James KD,
Johnson BE,
Johnson EM,
Frum TT,
Rosenzweig ER,
Karnani N,
Lee K,
Lefebvre GC,
Navas PA,
Neri F,
Parker SC,
Sabo PJ,
Sandstrom R,
Shafer A,
Vetrie D,
Weaver M,
Wilcox S,
Yu M,
Collins FS,
Dekker J,
Lieb JD,
Tullius TD,
Crawford GE,
Sunyaev S,
Noble WS,
Dunham I,
Denoeud F,
Reymond A,
Kapranov P,
Rozowsky J,
Zheng D,
Castelo R,
Frankish A,
Harrow J,
Ghosh S,
Sandelin A,
Hofacker IL,
Baertsch R,
Keefe D,
Dike S,
Cheng J,
Hirsch HA,
Sekinger EA,
Lagarde J,
Abril JF,
Shahab A,
Flamm C,
Fried C,
Hackermüller J,
Hertel J,
Lindemeyer M,
Missal K,
Tanzer A,
Washietl S,
Korbel J,
Emanuelsson O,
Pedersen JS,
Holroyd N,
Taylor R,
Swarbreck D,
Matthews N,
Dickson MC,
Thomas DJ,
Weirauch MT,
Gilbert J,
Drenkow J,
Bell I,
Zhao X,
Srinivasan KG,
Sung WK,
Ooi HS,
Chiu KP,
Foissac S,
Alioto T,
Brent M,
Pachter L,
Tress ML,
Valencia A,
Choo SW,
Choo CY,
Ucla C,
Manzano C,
Wyss C,
Cheung E,
Clark TG,
Brown JB,
Ganesh M,
Patel S,
Tammana H,
Chrast J,
Henrichsen CN,
Kai C,
Kawai J,
Nagalakshmi U,
Wu J,
Lian Z,
Lian J,
Newburger P,
Zhang X,
Bickel P,
Mattick JS,
Carninci P,
Hayashizaki Y,
Weissman S,
Hubbard T,
Myers RM,
Rogers J,
Stadler PF,
Lowe TM,
Wei CL,
Ruan Y,
Struhl K,
Gerstein M,
Antonarakis SE,
Fu Y,
Green ED,
Karaöz U,
Siepel A,
Taylor J,
Liefer LA,
Wetterstrand KA,
Good PJ,
Feingold EA,
Guyer MS,
Cooper GM,
Asimenos G,
Dewey CN,
Hou M,
Nikolaev S,
Montoya-Burgos JI,
Löytynoja A,
Whelan S,
Pardi F,
Massingham T,
Huang H,
Zhang NR,
Holmes I,
Mullikin JC,
Ureta-Vidal A,
Paten B,
Seringhaus M,
Church D,
Rosenbloom K,
Kent WJ,
Stone EA,
Batzoglou S,
Goldman N,
Hardison RC,
Haussler D,
Miller W,
Sidow A,
Trinklein ND,
Zhang ZD,
Barrera L,
Stuart R,
King DC,
Ameur A,
Enroth S,
Bieda MC,
Kim J,
Bhinge AA,
Jiang N,
Liu J,
Yao F,
Vega VB,
Lee CW,
Ng P,
Yang A,
Moqtaderi Z,
Zhu Z,
Xu X,
Squazzo S,
Oberley MJ,
Inman D,
Singer MA,
Richmond TA,
Munn KJ,
Rada-Iglesias A,
Wallerman O,
Komorowski J,
Fowler JC,
Couttet P,
Bruce AW,
Dovey OM,
Ellis PD,
Langford CF,
Nix DA,
Euskirchen G,
Hartman S,
Urban AE,
Kraus P,
Van Calcar S,
Heintzman N,
Hoon Kim T,
Wang K,
Qu C,
Hon G,
Luna R,
Glass CK,
Rosenfeld MG,
Aldred SF,
Cooper SJ,
Halees A,
Lin JM,
Shulha HP,
Xu M,
Haidar JN,
Yu Y,
Iyer VR,
Green RD,
Wadelius C,
Farnham PJ,
Ren B,
Harte RA,
Hinrichs AS,
Trumbower H,
Clawson H,
Hillman-Jackson J,
Zweig AS,
Smith K,
Thakkapallayil A,
Barber G,
Kuhn RM,
Karolchik D,
Armengol L,
Bird CP,
De Bakker PI,
Kern AD,
Lopez-Bigas N,
Martin JD,
Stranger BE,
Woodroffe A,
Davydov E,
Dimas A,
Eyras E,
Hallgrímsdóttir IB,
Huppert J,
Zody MC,
Abecasis GR,
Estivill X,
Bouffard GG,
Guan X,
Hansen NF,
Idol JR,
Maduro VV,
Maskeri B,
McDowell JC,
Park M,
Thomas PJ,
Young AC,
Blakesley RW,
Muzny DM,
Sodergren E,
Wheeler DA,
Worley KC,
Jiang H,
Weinstock GM,
Gibbs RA,
Graves T,
Fulton R,
Mardis ER,
Wilson RK,
Clamp M,
Cuff J,
Gnerre S,
Jaffe DB,
Chang JL,
Lindblad-Toh K,
Lander ES,
Koriabine M,
Nefedov M,
Osoegawa K,
Yoshinaga Y,
Zhu B,
De Jong PJ

Nature
  447 (7146): 799-816; 2007  
[Abstract]
[DOI] [Full Text]


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