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16 Article(s) on File
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Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize
Thiebaut F,
Rojas CA,
Grativol C,
Motta MR,
Vieira T,
Regulski M,
Martienssen RA,
Farinelli L,
Hemerly AS,
Ferreira PC

BMC Genomics
  15 (0): Sep 6 2014   NLM
[Abstract]
[DOI] [Full Text]

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum
Grativol C,
Regulski M,
Bertalan M,
McCombie WR,
da Silva FR,
Zerlotini Neto A,
Vicentini R,
Farinelli L,
Hemerly AS,
Martienssen RA,
Ferreira PC

Plant Journal
  79 (1): 162-172; Jul 2014   NLM
[DOI] [Full Text]

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
Brownstein CA,
Beggs AH,
Homer N,
Merriman B,
Yu TW,
Flannery KC,
Dechene ET,
Towne MC,
Savage SK,
Price EN,
Holm IA,
Luquette LJ,
Lyon E,
Majzoub J,
Neupert P,
McCallie D,
Szolovits P,
Willard HF,
Mendelsohn NJ,
Temme R,
Finkel RS,
Yum SW,
Medne L,
Sunyaev SR,
Adzhubey I,
Cassa CA,
de Bakker PI,
Duzkale H,
Dworzy Ski P,
Fairbrother W,
Francioli L,
Funke BH,
Giovanni MA,
Handsaker RE,
Lage K,
Lebo MS,
Lek M,
Leshchiner I,
Macarthur DG,
McLaughlin HM,
Murray MF,
Pers TH,
Polak PP,
Raychaudhuri S,
Rehm HL,
Soemedi R,
Stitziel NO,
Vestecka S,
Supper J,
Gugenmus C,
Klocke B,
Hahn A,
Schubach M,
Menzel M,
Biskup S,
Freisinger P,
Deng M,
Braun M,
Perner S,
Smith RJ,
Andorf JL,
Huang J,
Ryckman K,
Sheffield VC,
Stone EM,
Bair T,
Black-Ziegelbein EA,
Braun TA,
Darbro B,
Deluca AP,
Kolbe DL,
Scheetz TE,
Shearer AE,
Sompallae R,
Wang K,
Bassuk AG,
Edens E,
Mathews K,
Moore SA,
Shchelochkov OA,
Trapane P,
Bossler A,
Campbell CA,
Heusel JW,
Kwitek A,
Maga T,
Panzer K,
Wassink T,
Van Daele D,
Azaiez H,
Booth K,
Meyer N,
Segal MM,
Williams MS,
Tromp G,
White P,
Corsmeier D,
Fitzgerald-Butt S,
Herman G,
Lamb-Thrush D,
McBride KL,
Newsom D,
Pierson CR,
Rakowsky AT,
Maver A,
Lovre IL,
Palanda IA,
Peterlin B,
Torkamani A,
Wedell A,
Huss M,
Alexeyenko A,
Lindvall JM,
Magnusson M,
Nilsson D,
Stranneheim H,
Taylan F,
Gilissen C,
Hoischen A,
van Bon B,
Yntema H,
Nelen M,
Zhang W,
Sager J,
Zhang L,
Blair K,
Kural D,
Cariaso M,
Lennon GG,
Javed A,
Agrawal S,
Ng PC,
Sandhu KS,
Krishna S,
Veeramachaneni V,
Isakov O,
Halperin E,
Friedman E,
Shomron N,
Glusman G,
Roach JC,
Caballero J,
Cox HC,
Mauldin D,
Ament SA,
Rowen L,
Richards DR,
Lucas FA,
Gonzalez-Garay ML,
Caskey CT,
Bai Y,
Huang Y,
Fang F,
Zhang Y,
Wang Z,
Barrera J,
Garcia-Lobo JM,
Gonzalez-Lamuno D,
Llorca J,
Rodriguez MC,
Varela I,
Reese MG,
De La Vega FM,
Kiruluta E,
Cargill M,
Hart RK,
Sorenson JM,
Lyon GJ,
Stevenson DA,
Bray BE,
Moore BM,
Eilbeck K,
Yandell M,
Zhao H,
Hou L,
Chen X,
Yan X,
Chen M,
Li C,
Yang C,
Gunel M,
Li P,
Kong Y,
Alexander AC,
Albertyn ZI,
Boycott KM,
Bulman DE,
Gordon PM,
Innes AM,
Knoppers BM,
Majewski J,
Marshall CR,
Parboosingh JS,
Sawyer SL,
Samuels ME,
Schwartzentruber J,
Kohane IS,
Margulies DM

Genome Biology
  15 (3): R53; Mar 25 2014   NLM
[Abstract]
[DOI] [Full Text]

Genome-wide discovery and characterization of maize long non-coding RNAs
Li L,
Eichten SR,
Shimizu R,
Petsch K,
Yeh CT,
Wu W,
Chettoor AM,
Givan SA,
Cole RA,
Fowler JE,
Evans MM,
Scanlon MJ,
Yu JM,
Schnable PS,
Timmermans MC,
Springer NM,
Muehlbauer GJ

Genome Biology
  15 (2): R40; Feb 2014 2014   NLM
[Abstract]
[DOI] [Full Text]

Genome-wide discovery and characterization of maize long non-coding RNAs
Li L,
Eichten SR,
Shimizu R,
Petsch K,
Yeh CT,
Wu W,
Chettoor AM,
Givan SA,
Cole RA,
Fowler JE,
Evans MM,
Scanlon MJ,
Yu JM,
Schnable PS,
Timmermans MC,
Springer NM,
Muehlbauer GJ

Genome Biology
  15 (2): 15; Feb27 2014   NLM
[Abstract]
[DOI] [Full Text]

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
Ming R,
VanBuren R,
Liu YL,
Yang M,
Han YP,
Li LT,
Zhang Q,
Kim MJ,
Schatz MC,
Campbell M,
Li JP,
Bowers JE,
Tang HB,
Lyons E,
Ferguson AA,
Narzisi G,
Nelson DR,
Blaby-Haas CE,
Gschwend AR,
Jiao YN,
Der JP,
Zeng FC,
Han J,
Min XJ,
Hudson KA,
Singh R,
Grennan AK,
Karpowicz SJ,
Watling JR,
Ito K,
Robinson SA,
Hudson ME,
Yu QY,
Mockler TC,
Carroll A,
Zheng Y,
Sunkar R,
Jia RZ,
Chen N,
Arro J,
Wai CM,
Wafula E,
Spence A,
Han YN,
Xu LM,
Zhang JS,
Peery R,
Haus MJ,
Xiong WW,
Walsh JA,
Wu J,
Wang ML,
Zhu YJ,
Paull RE,
Britt AB,
Du CG,
Downie SR,
Schuler MA,
Michael TP,
Long SP,
Ort DR,
Schopf JW,
Gang DR,
Jiang N,
Yandell M,
dePamphilis CW,
Merchant SS,
Paterson AH,
Buchanan BB,
Li SH,
Shen-Miller J

Genome Biology
  14 (5): 2013  
[Abstract]
[DOI] [Full Text]

Mendelian and Non-Mendelian Regulation of Gene Expression in Maize
Li L,
Petsch K,
Shimizu R,
Liu S,
Xu WW,
Ying K,
Yu J,
Scanlon MJ,
Schnable PS,
Timmermans MC,
Springer NM,
Muehlbauer GJ

PLoS Genetics
  9 (1): Article numbere10032; Jan 2013  
[Abstract]
[DOI] [Full Text]

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Derrien T,
Johnson R,
Bussotti G,
Tanzer A,
Djebali S,
Tilgner H,
Guernec G,
Martin D,
Merkel A,
Knowles DG,
Lagarde J,
Veeravalli L,
Ruan XA,
Ruan YJ,
Lassmann T,
Carninci P,
Brown JB,
Lipovich L,
Gonzalez JM,
Thomas M,
Davis CA,
Shiekhattar R,
Gingeras TR,
Hubbard TJ,
Notredame C,
Harrow J,
Guigo R

Genome Research
  22 (9): 1775-1789; Sep 2012  
[Abstract]
[DOI] [Full Text]

Computational identification and analysis of novel sugarcane microRNAs
Thiebaut F,
Grativol C,
Carnavale-Bottino M,
Rojas CA,
Tanurdzic M,
Farinelli L,
Martienssen RA,
Hemerly AS,
Ferreira PC

BMC genomics
  13 (0): 290; Jul 2 2012  
[Abstract]
[DOI] [Full Text]

Integrating overlapping structures and background information of words significantly improves biological sequence comparison
Dai Q,
Li L,
Liu X,
Yao Y,
Zhao F,
Zhang M

PLoS ONE
  6 (11): Nov 10 2011  
[Abstract]
[DOI] [Full Text]

The GATA site-dependent hemogen promoter is transcriptionally regulated by GATA1 in hematopoietic and leukemia cells
Yang LV,
Wan J,
Ge Y,
Fu Z,
Kim SY,
Fujiwara Y,
Taub JW,
Matherly LH,
Eliason J,
Li L

Leukemia
  20 (3): 417-425; 2006  
[Abstract]
[DOI] [Full Text] [PDF]

Neural potential of stem cells in the hair follicle
Enikolopov G,
Hoffman R,
Li LN,
Maletic-Savatic M,
Manganas L,
Mignone J,
Roig J,
Schones D,
Zhang M

Faseb Journal
  19 (4): A765-A765; Mar 2005  


Nestin expression in hair follicle sheath progenitor cells
Li LN,
Mignone J,
Yang M,
Matic M,
Penman S,
Enikolopov G,
Hoffman RM

Proceedings of the National Academy of Sciences of the United States of America
  100 (17): 9958-9961; Aug 2003  
[Abstract]
[Full Text]

Nestin expression in hair follicle stem cells
Hoffman RM,
Li L,
Mignone J,
Yang M,
Enikolopov G

Journal of Investigative Dermatology
  119 (1): 291-291; Jul 2002  
[Full Text]

The 5 upstream DNA sequence of the SM22 promoter cannot maintain and its first intron is not required for gene transcription in adult murine smooth muscle cells
Li L,
Yang LV,
Yang MZ,
Qiu P,
Kim SY,
Chen Z,
Dichek DA,
Li JB,
Ho YS

Circulation
  104 (17): 238-238; Oct 2001  
[Full Text]

Note on the time intensity factor in radiobiology
Fano U,
Marinelli LD

Proceedings of the National Academy of Sciences
  29 (2): 59-66; 1943  
[Full Text]


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