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15 Article(s) on File
Page 1 of 1
Diverse modes of evolutionary emergence and flux of conserved microRNA clusters
Mohammed J,
Siepel A,
Lai EC

RNA
  20 (12): 1850-1863; Dec 1 2014   Elsevier
[Abstract]
[DOI] [Full Text]

Comparative analysis of the transcriptome across distant species
Gerstein MB,
Rozowsky J,
Yan KK,
Wang D,
Cheng C,
Brown JB,
Davis CA,
Hillier L,
Sisu C,
Li JJ,
Pei B,
Harmanci AO,
Duff MO,
Djebali S,
Alexander RP,
Alver BH,
Auerbach R,
Bell K,
Bickel PJ,
Boeck ME,
Boley NP,
Booth BW,
Cherbas L,
Cherbas P,
Di C,
Dobin A,
Drenkow J,
Ewing B,
Fang G,
Fastuca M,
Feingold EA,
Frankish A,
Gao G,
Good PJ,
Guigo R,
Hammonds A,
Harrow J,
Hoskins RA,
Howald C,
Hu L,
Huang H,
Hubbard TJ,
Huynh C,
Jha S,
Kasper D,
Kato M,
Kaufman TC,
Kitchen RR,
Ladewig E,
Lagarde J,
Lai E,
Leng J,
Lu Z,
MacCoss M,
May G,
McWhirter R,
Merrihew G,
Miller DM,
Mortazavi A,
Murad R,
Oliver B,
Olson S,
Park PJ,
Pazin MJ,
Perrimon N,
Pervouchine D,
Reinke V,
Reymond A,
Robinson G,
Samsonova A,
Saunders GI,
Schlesinger F,
Sethi A,
Slack FJ,
Spencer WC,
Stoiber MH,
Strasbourger P,
Tanzer A,
Thompson OA,
Wan KH,
Wang G,
Wang H,
Watkins KL,
Wen J,
Wen K,
Xue C,
Yang L,
Yip K,
Zaleski C,
Zhang Y,
Zheng H,
Brenner SE,
Graveley BR,
Celniker SE,
Gingeras TR,
Waterston R

Nature
  512 (7515): 445-8; Aug 28 2014   Nlm
[Abstract]
[DOI] [Full Text]

Diversity and dynamics of the Drosophila transcriptome
Brown JB,
Boley N,
Eisman R,
May GE,
Stoiber MH,
Duff MO,
Booth BW,
Wen J,
Park S,
Suzuki AM,
Wan KH,
Yu C,
Zhang D,
Carlson JW,
Cherbas L,
Eads BD,
Miller D,
Mockaitis K,
Roberts J,
Davis CA,
Frise E,
Hammonds AS,
Olson S,
Shenker S,
Sturgill D,
Samsonova AA,
Weiszmann R,
Robinson G,
Hernandez J,
Andrews J,
Bickel PJ,
Carninci P,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Lai EC,
Oliver B,
Perrimon N,
Graveley BR,
Celniker SE

Nature
  512 (7515): 393; Aug 28 2014   NLM
[Abstract]
[DOI] [Full Text]

A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity
Fagegaltier D,
Konig A,
Gordon A,
Lai EC,
Gingeras TR,
Hannon GJ,
Shcherbata HR

Genetics
  198 (2): 647-668; Jul 31 2014   Nlm
[Abstract]
[DOI] [Full Text]

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
Berezikov E,
Robine N,
Samsonova A,
Westholm JO,
Naqvi A,
Hung JH,
Okamura K,
Dai Q,
Bortolamiol-Becet D,
Martin R,
Zhao YJ,
Zamore PD,
Hannon GJ,
Marra MA,
Weng ZP,
Perrimon N,
Lai EC

Genome Research
  21 (2): 203-215; Feb 2011   PMC3032924
[Abstract]
[DOI]

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Roy S,
Ernst J,
Kharchenko PV,
Kheradpour P,
Negre N,
Eaton ML,
Landolin JM,
Bristow CA,
Ma LJ,
Lin MF,
Washietl S,
Arshinoff BI,
Ay F,
Meyer PE,
Robine N,
Washington NL,
Di Stefano L,
Berezikov E,
Brown CD,
Candeias R,
Carlson JW,
Carr A,
Jungreis I,
Marbach D,
Sealfon R,
Tolstorukov MY,
Will S,
Alekseyenko AA,
Artieri C,
Booth BW,
Brooks AN,
Dai Q,
Davis CA,
Duff MO,
Feng X,
Gorchakov AA,
Gu TT,
Henikoff JG,
Kapranov P,
Li RH,
MacAlpine HK,
Malone J,
Minoda A,
Nordman J,
Okamura K,
Perry M,
Powell SK,
Riddle NC,
Sakai A,
Samsonova A,
Sandler JE,
Schwartz YB,
Sher N,
Spokony R,
Sturgill D,
van Baren M,
Wan KH,
Yang L,
Yu C,
Feingold E,
Good P,
Guyer M,
Lowdon R,
Ahmad K,
Andrews J,
Berger B,
Brenner SE,
Brent MR,
Cherbas L,
Elgin SC,
Gingeras TR,
Grossman R,
Hoskins RA,
Kaufman TC,
Kent W,
Kuroda MI,
Orr-Weaver T,
Perrimon N,
Pirrotta V,
Posakony JW,
Ren B,
Russell S,
Cherbas P,
Graveley BR,
Lewis S,
Micklem G,
Oliver B,
Park PJ,
Celniker SE,
Henikoff S,
Karpen GH,
Lai EC,
MacAlpine DM,
Stein LD,
White KP,
Kellis M

Science
  330 (6012): 1787-1797; Dec 2010   PMC3192495
[Abstract]
[DOI] [Full Text] [PDF]

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Gerstein MB,
Lu ZJ,
Van Nostrand EL,
Cheng C,
Arshinoff BI,
Liu T,
Yip KY,
Robilotto R,
Rechtsteiner A,
Ikegami K,
Alves P,
Chateigner A,
Perry M,
Morris M,
Auerbach RK,
Feng X,
Leng J,
Vielle A,
Niu W,
Rhrissorrakrai K,
Agarwal A,
Alexander RP,
Barber G,
Brdlik CM,
Brennan J,
Brouillet JJ,
Carr A,
Cheung MS,
Clawson H,
Contrino S,
Dannenberg LO,
Dernburg AF,
Desai A,
Dick L,
Dose AC,
Du JA,
Egelhofer T,
Ercan S,
Euskirchen G,
Ewing B,
Feingold EA,
Gassmann R,
Good PJ,
Green P,
Gullier F,
Gutwein M,
Guyer MS,
Habegger L,
Han T,
Henikoff JG,
Henz SR,
Hinrichs A,
Holster H,
Hyman T,
Iniguez AL,
Janette J,
Jensen M,
Kato M,
Kent WJ,
Kephart E,
Khivansara V,
Khurana E,
Kim JK,
Kolasinska-Zwierz P,
Lai EC,
Latorre I,
Leahey A,
Lewis S,
Lloyd P,
Lochovsky L,
Lowdon RF,
Lubling Y,
Lyne R,
MacCoss M,
Mackowiak SD,
Mangone M,
McKay SJ,
Mecenas D,
Merrihew G,
Miller DM,
Muroyama A,
Murray JI,
Ooi SL,
Pham H,
Phippen T,
Preston EA,
Rajewsky N,
Ratsch G,
Rosenbaum H,
Rozowsky J,
Rutherford K,
Ruzanov P,
Sarov M,
Sasidharan R,
Sboner A,
Scheid P,
Segal E,
Shin HJ,
Shou C,
Slack FJ,
Slightam C,
Smith R,
Spencer WC,
Stinson EO,
Taing S,
Takasaki T,
Vafeados D,
Voronina K,
Wang GL,
Washington NL,
Whittle CM,
Wu BJ,
Yan KK,
Zeller G,
Zha Z,
Zhong M,
Zhou XL,
Ahringer J,
Strome S,
Gunsalus KC,
Micklem G,
Liu XS,
Reinke V,
Kim SK,
Hillier LW,
Henikoff S,
Piano F,
Snyder M,
Stein LD,
Lieb JD,
Waterston RH

Science
  330 (6012): 1775-1787; Dec 2010   PMC3142569
[Abstract]
[DOI] [Full Text] [PDF]

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
Berezikov E,
Liu N,
Flynt AS,
Hodges E,
Rooks M,
Hannon GJ,
Lai EC

Nature Genetics
  42 (1): 6-9; Jan 2010  
[DOI] [Full Text] [PDF]

Unlocking the secrets of the genome
Celniker SE,
Dillon LA,
Gerstein MB,
Gunsalus KC,
Henikoff S,
Karpen GH,
Kellis M,
Lai EC,
Lieb JD,
MacAlpine DM,
Micklem G,
Piano F,
Snyder M,
Stein LD,
White KP,
Waterston RH

Nature
  459 (7249): 927-30; Jun 18 2009   PMCID: PMC2843545
[DOI] [Full Text] [PDF]

Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
Tyler DM,
Okamura K,
Chung WJ,
Hagen JW,
Berezikov E,
Hannon GJ,
Lai EC

Genes Dev
  22 (1): 26-36; Jan 1 2008   PMCID: PMC2151012
[Abstract]
[DOI] [Full Text] [PDF]

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
Stark A,
Lin MF,
Kheradpour P,
Pedersen JS,
Parts L,
Carlson JW,
Crosby MA,
Rasmussen MD,
Roy S,
Deoras AN,
Ruby JG,
Brennecke J,
Hodges E,
Hinrichs AS,
Caspi A,
Paten B,
Park SW,
Han MV,
Maeder ML,
Polansky BJ,
Robson BE,
Aerts S,
van Helden J,
Hassan B,
Gilbert DG,
Eastman DA,
Rice M,
Weir M,
Hahn MW,
Park Y,
Dewey CN,
Pachter L,
Kent WJ,
Haussler D,
Lai EC,
Bartel DP,
Hannon GJ,
Kaufman TC,
Eisen MB,
Clark AG,
Smith D,
Celniker SE,
Gelbart WM,
Kellis M

Nature
  450 (7167): 219-232; Nov 2007  
[Abstract]
[DOI] [Full Text] [PDF]

The International HapMap Project
Gibbs RA,
Belmont JW,
Hardenbol P,
Willis TD,
Yu FL,
Yang HM,
Chang LY,
Huang W,
Liu B,
Shen Y,
Tam PK,
Tsui LC,
Waye MM,
Wong JT,
Zeng CQ,
Zhang QR,
Chee MS,
Galver LM,
Kruglyak S,
Murray SS,
Oliphant AR,
Montpetit A,
Hudson TJ,
Chagnon F,
Ferretti V,
Leboeuf M,
Phillips MS,
Verner A,
Kwok PY,
Duan SH,
Lind DL,
Miller RD,
Rice JP,
Saccone NL,
Taillon-Miller P,
Xiao M,
Nakamura Y,
Sekine A,
Sorimachi K,
Tanaka T,
Tanaka Y,
Tsunoda T,
Yoshino E,
Bentley DR,
Deloukas P,
Hunt S,
Powell D,
Altshuler D,
Gabriel SB,
Qiu RZ,
Ken A,
Dunston GM,
Kato K,
Niikawa N,
Knoppers BM,
Foster MW,
Clayton EW,
Wang VO,
Watkin J,
Sodergren E,
Weinstock GM,
Wilson RK,
Fulton LL,
Rogers J,
Birren BW,
Han H,
Wang HG,
Godbout M,
Wallenburg JC,
LArcheveque P,
Bellemare G,
Todani K,
Fujita T,
Tanaka S,
Holden AL,
Lai EH,
Collins FS,
Brooks LD,
McEwen JE,
Guyer MS,
Jordan E,
Peterson JL,
Spiegel J,
Sung LM,
Zacharia LF,
Kennedy K,
Dunn MG,
Seabrook R,
Shillito M,
Skene B,
Stewart JG,
Valle DL,
Jorde LB,
Chakravarti A,
Cho MK,
Duster T,
Jasperse M,
Licinio J,
Long JC,
Marshall PA,
Ossorio PN,
Rotimi CN,
Royal CD,
Spallone P,
Terry SF,
Lander ES,
Nickerson DA,
Abecasis GR,

Nature
  426 (6968): 789-796; Dec 2003  
[Abstract]
[DOI] [Full Text]

A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set
Matise TC,
Sachidanandam R,
Clark AG,
Kruglyak L,
Wijsman E,
Kakol J,
Buyske S,
Chui B,
Cohen P,
de Toma C,
Ehm M,
Glanowski S,
He CS,
Heil J,
Markianos K,
McMullen I,
Pericak-Vance MA,
Silbergleit A,
Stein L,
Wagner M,
Wilson AF,
Winick JD,
Winn-Deen ES,
Yamashiro CT,
Cann HM,
Lai E,
Holden AL

American Journal of Human Genetics
  73 (2): 271-284; Aug 2003  
[Abstract]
[Full Text]

A high-resolution human SNP linkage map
Matise TC,
Sachidanandam R,
Clark A,
Kruglyak L,
Wijsman E,
Chui B,
Cohen P,
de Toma C,
Ehm M,
Glanowski S,
He C,
Heil J,
McMullen I,
Stein L,
Wagner M,
Winick J,
Winn-Deen ES,
Cann HM,
Lai E,
Holden HL

American Journal of Human Genetics
  71 (4): 206-206; Oct 2002  
[Full Text]

Telomere Length Predicts Replicative Capacity of Human Fibroblasts
Allsopp RC,
Vaziri H,
Patterson C,
Goldstein S,
Younglai EV,
Futcher AB,
Greider CW,
Harley CB

Proceedings of the National Academy of Sciences of the United States of America
  89 (21): 10114-10118; Nov 1992  
[Abstract]
[Full Text]


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