Cold Spring Harbor Library  CSHL: Home
   Home       Services       Archives       About Us   
 
CSHL Publication List
CSHL Authors Publications
Go back to Search Mode

          
Sort by   in order
27 Article(s) on File
Page 1 of 1
Significant distinct branches of hierarchical trees: a framework for statistical analysis and applications to biological data
Sun G,
Krasnitz A

BMC Genomics
  15 (0): 1000; Nov 19 2014   Nlm
[Abstract]
[DOI] [Full Text]

Computational methods for DNA copy-number analysis of tumors
Kendall J,
Krasnitz A

Methods Mol Biol
  1176 (0): 243-59; Jul 2014 2014   Nlm
[Abstract]
[DOI] [Full Text]

Two Distinct Categories of Focal Deletions in Cancer Genomes
Rajaram M,
Zhang J,
Wang T,
Li J,
Kuscu C,
Qi H,
Kato M,
Grubor V,
Weil RJ,
Helland A,
Borrenson-Dale AL,
Cho KR,
Levine DA,
Houghton AN,
Wolchok JD,
Myeroff L,
Markowitz SD,
Lowe SW,
Zhang M,
Krasnitz A,
Lucito R,
Mu D,
Powers RS

PLoS ONE
  8 (6): e66264; Jun 21 2013   NLM
[Abstract]
[DOI] [Full Text]

Target inference from collections of genomic intervals
Krasnitz A,
Sun G,
Andrews P,
Wigler M

Proc Natl Acad Sci U S A
  110 (25): E2271-E2278; Jun 6 2013   NLM
[Abstract]
[DOI] [Full Text]

An oncogenome-based RNAi screen identifies a tumour suppressor network in B-cell lymphoma relying on the polyamine-hypusine axis
Miething C,
Scuoppo C,
Lindqvist L,
Reyes J,
Ruse C,
Appelmann I,
Yoon S,
Krasnitz A,
Teruya-Feldstein J,
Pappin D,
Pelletier J,
Lowe S

Onkologie
  35 (0): 104-104; Oct 6 2012  
[Full Text]

DDX5 Regulates DNA Replication and Is Required for Cell Proliferation in a Subset of Breast Cancer Cells
Mazurek A,
Luo WJ,
Krasnitz A,
Hicks J,
Powers RS,
Stillman B

Cancer Discovery
  2 (9): 812-825; Sep 2012  
[Abstract]
[DOI] [Full Text]

A tumour suppressor network relying on the polyamine-hypusine axis
Scuoppo C,
Miething C,
Lindqvist L,
Reyes J,
Ruse C,
Appelmann I,
Yoon S,
Krasnitz A,
Teruya-Feldstein J,
Pappin D,
Pelletier J,
Lowe SW

Nature
  487 (7406): 244-8; Jul 12 2012   NLM
[Abstract]
[DOI] [Full Text]

Cooperating Tumor Suppressor Genes on Chromosome 8p Predict Survival Outcome in Hepatocellular Carcinoma
Kitzing T,
Xue W,
Roessler S,
Krasnitz A,
Schultz N,
Wang XW,
Wigler M,
Lowe SW

European Journal of Cancer
  48 (0): S139-S139; Jul 2012  
[Full Text]

A cluster of cooperating tumor-suppressor gene candidates in chromosomal deletions
Xue W,
Kitzing T,
Roessler S,
Zuber J,
Krasnitz A,
Schultz N,
Revill K,
Weissmueller S,
Rappaport AR,
Simon J,
Zhang J,
Luo WJ,
Hicks J,
Zender L,
Wang XW,
Powers S,
Wigler M,
Lowe SW

Proceedings of the National Academy of Sciences of the United States of America
  109 (21): 8212-8217; May 2012  
[Abstract]
[DOI] [Full Text]

Tumour evolution inferred by single-cell sequencing
Navin NE,
Kendall JT,
Troge JE,
Andrews P,
Rodgers ,
McIndoo J,
Cook K,
Stepansky ,
Levy D,
Esposito D,
Muthuswamy L,
Krasnitz A,
McCombie WR,
Hicks JB,
Wigler MH

Nature
  (0): 2011   Elsevier
[Abstract]
[DOI] [Full Text]

Towards patient-based cancer therapeutics
Schreiber SL,
Shamji AF,
Clemons PA,
Hon C,
Koehler AN,
Munoz B,
Palmer M,
Stern AM,
Wagner BK,
Powers S,
Lowe SW,
Guo X,
Krasnitz A,
Sawey ET,
Sordella R,
Stein LD,
Trotman LC,
Califano A,
Dalla-Favera R,
Ferrando A,
Iavarone A,
Pasqualucci L,
Silva J,
Stockwell BR,
Hahn WC,
Chin L,
DePinho RA,
Boehm JS,
Gopal S,
Huang A,
Root DE,
Weir BA,
Gerhard DS,
Zenklusen JC,
Roth MG,
White MA,
Minna JD,
MacMillan JB,
Posner BA

Nature Biotechnology
  28 (9): 904-906; Sep 2010   PMCID: PMC2939009
[DOI] [Full Text] [PDF]

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients
Russnes HG,
Vollan HK,
Lingjærde OC,
Krasnitz A,
Lundin P,
Naume B,
Sørlie T,
Borgen E,
Rye IH,
Langerød A,
Chin SF,
Teschendorff AE,
Stephens PJ,
Månér S,
Schlichting E,
Baumbusch LO,
Kåresen R,
Stratton MP,
Wigler MH,
Caldas C,
Zetterberg A,
Hicks JB,
Børresen-Dale AL

Science Translational Medicine
  2 (38): Jun 30 2010  
[Abstract]
[DOI] [Full Text] [PDF]

A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding
Floer M,
Wang X,
Prabhu V,
Berrozpe G,
Narayan S,
Spagna D,
Alvarez D,
Kendall JT,
Krasnitz A,
Stepansky ,
Hicks JB,
Bryant GO,
Ptashne M

Cell
  141 (3): 407-418; Apr 29 2010   PMCID: PMC3032599
[Abstract]
[DOI] [Full Text] [PDF]

Inferring tumor progression from genomic heterogeneity
Navin NE,
Krasnitz A,
Rodgers L,
Cook K,
Meth JL,
Kendall JT,
Riggs M,
Eberling Y,
Troge JE,
Grubor V,
Levy D,
Lundin P,
Månér S,
Zetterberg A,
Hicks JB,
Wigler MH

Genome Research
  20 (1): 68-80; Jan 2010   PMCID: PMC2798832
[Abstract]
[DOI] [Full Text] [PDF]

Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model
Bric A,
Miething C,
Bialucha CU,
Scuoppo C,
Zender L,
Krasnitz A,
Xuan Z,
Zuber J,
Wigler MH,
Hicks JB,
McCombie RW,
Hemann MT,
Hannon GJ,
Powers S,
Lowe SW

Cancer Cell
  16 (4): 324-35; Oct 6 2009   PMC2829755
[Abstract]
[DOI] [Full Text] [PDF]

Molecular subclassification of breast carcinomas based on aCGH reveals two major groups of tumors with common genomic, transcriptomic and clinicopathological characteristics
Russnes HG,
Vollan HK,
Sorlie T,
Krasnitz A,
Zetterberg A,
Naume B,
Borgen E,
Nesland JM,
Wigler MH,
Borresen-Dale AL,
Hicks JB

Apmis
  117 (3): 238-239; Mar 2009  
[Full Text]

Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA)
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle RN,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  113 (6): 1294-1303; Feb 5 2009  
[Abstract]
[DOI] [Full Text] [PDF]

An Oncogenomics-Based In Vivo RNAi Screen Identifies Tumor Suppressors in Liver Cancer
Zender L,
Xue W,
Zuber J,
Semighini CP,
Krasnitz A,
Ma B,
Zender P,
Kubicka S,
Luk JM,
Schirmacher P,
McCombie WR,
Wigler MH,
Hicks JB,
Hannon GJ,
Powers S,
Lowe SW

Cell
  135 (5): 852-864; Nov 28 2008   PMC2990916
[Abstract]
[DOI] [Full Text] [PDF]

High-Resolution Array-Based Comparative Genome Hybridization (CGH) Identifies Novel and Recurrent Regions in CLL
Grubor V,
Krasnitz A,
Troge JE,
Meth JL,
Lakshmi B,
Kendall JT,
Yamrom B,
Alex G,
Pai D,
Navin NE,
Hufnagel LA,
Lee YH,
Cook K,
Allen SL,
Rai KR,
Damle R,
Calissano C,
Chiorazzi N,
Wigler MH,
Esposito D

Blood
  112 (11): 717-717; Nov 2008  
[Abstract]
[Full Text]

Brk is coamplified with ErbB2 to promote proliferation in breast cancer
Xiang B,
Chatti K,
Qiu H,
Lakshmi B,
Krasnitz A,
Hicks JB,
Yu M,
Miller WT,
Muthuswamy SK

Proc Natl Acad Sci U S A
  105 (34): 12463-8; Aug 26 2008   PMCID: PMC2527934
[Abstract]
[DOI] [Full Text] [PDF]

Molecular subclassification of breast carcinomas based on aCGH, gene expression, IHC and ploidy - relevance for clinical outcome
Russnes HG,
Sorlie T,
Krasnitz A,
Zetterberg A,
Naume B,
Borgen E,
Nesland JM,
Wigler MH,
Borresen-Dale AL,
Hicks JB

Ejc Supplements
  6 (9): 9-9; Jul 2008  
[DOI]

DLC1 is a chromosome 8p tumor suppressor whose loss promotes hepatocellular carcinoma
Xue W,
Krasnitz A,
Lucito R,
Sordella R,
Van Aelst L,
Cordon-Cardo C,
Singer S,
Kuehnel F,
Wigler MH,
Powers S,
Zender L,
Lowe SW

Genes Dev
  22 (11): 1439-44; Jun 1 2008   PMCID: PMC2418580
[Abstract]
[DOI] [Full Text] [PDF]

Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer
Kendall JT,
Liu QA,
Bakleh A,
Krasnitz A,
Nguyen KC,
Lakshmi B,
Gerald W,
Powers S,
Mu D

Proc Natl Acad Sci U S A
  104 (42): 16663-16668; Oct 16 2007   PMCID: PMC2034240
[Abstract]
[DOI] [Full Text] [PDF]

Copy-Number Variants in Patients with a Strong Family History of Pancreatic Cancer
Lucito R,
Suresh S,
Walter K,
Pandey A,
Lakshmi B,
Krasnitz A,
Sebat J,
Wigler MH,
Klein AP,
Brune K,
Palmisano E,
Maitra A,
Goggins M,
Hruban RH

Cancer Biol Ther
  6 (10): 1592-9; Oct 2007  
[Abstract]
[DOI] [Full Text]

Strong Association of De Novo Copy Number Mutations with Autism
Sebat J,
Lakshmi B,
Malhotra D,
Troge JE,
Lese-Martin C,
Walsh T,
Yamrom B,
Yoon S,
Krasnitz A,
Kendall JT,
Leotta A,
Pai D,
Zhang R,
Lee YH,
Hicks JB,
Spence SJ,
Lee AT,
Puura K,
Lehtimaki T,
Ledbetter D,
Gregersen PK,
Bregman J,
Sutcliffe JS,
Jobanputra V,
Chung W,
Warburton D,
King MC,
Skuse D,
Geschwind DH,
Gilliam TC,
Ye K,
Wigler MH

Science
  316 (5823): 445-449; April 20 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Novel patterns of genome rearrangement and their association with survival in breast cancer
Hicks JB,
Krasnitz A,
Lakshmi B,
Navin NE,
Riggs M,
Leibu E,
Esposito D,
Alexander J,
Troge JE,
Grubor V,
Yoon S,
Wigler MH,
Ye K,
Borresen-Dale AL,
Naume B,
Schlicting E,
Norton L,
Hagerstrom T,
Skoog L,
Auer G,
Månér S,
Lundin P,
Zetterberg A

Genome Res
  16 (12): 1465-79; Dec 2006  
[Abstract]
[DOI] [Full Text] [PDF]

High-resolution ROMA CGH and FISH analysis of aneuploid and diploid breast tumors
Hicks JB,
Muthuswamy L,
Krasnitz A,
Navin NE,
Riggs M,
Grubor V,
Esposito D,
Alexander J,
Troge JE,
Wigler MH,
Maner S,
Lundin P,
Zetterberg A

Cold Spring Harbor Symposia on Quantitative Biology VXX: Molecular approaches to controlling cancer
  70 51-63; 2005  
[Abstract]
[DOI] [Full Text]


Page 1 of 1

Go back to Search Mode


Last Updated: September, 2017
Most Recent Publications: Jan 13, 2015

© 2012   CSHL Library and Archives   1 Bungtown Rd.   Cold Spring Harbor, NY 11724   Library Information 516-367-6872
CSHL Home Intranet