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23 Article(s) on File
Page 1 of 1
Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking
Chen H,
Jackson D,
Kim JY

Plant Signaling and Behavior
  9 (2): Feb 28 2014   Nlm
[Abstract]
[Full Text]

WNT3 inhibits cerebellar granule neuron progenitor proliferation and medulloblastoma formation via MAPK activation
Anne SL,
Govek EE,
Ayrault O,
Kim JH,
Zhu X,
Murphy DA,
Van Aelst L,
Roussel MF,
Hatten ME

PLoS ONE
  8 (11): Nov 26 2013  
[Abstract]
[DOI] [Full Text]

FANCD2 Activates Transcription of TAp63 and Suppresses Tumorigenesis
Park E,
Kim H,
Kim J,
Primack B,
Vidal-Cardenas S,
Xu Y,
Price B,
Mills A,
D’Andrea A

Molecular Cell
  50 (6): 908-918; Jun 27 2013  
[Abstract]
[DOI] [Full Text]

Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map data
Kawahara Y,
de la Bastide M,
Cabal R,
Hamilton JP,
Kanamori H,
McCombie WR,
Ouyang S,
Schwartz DC,
Tanaka T,
Wu J,
Zhou S,
Childs KL,
Davidson RM,
Lin H,
Quesada-Ocampo L,
Vaillancourt B,
Sakai H,
Lee SS,
Kim J,
Numa H,
Itoh T,
Buell CR,
Matsumoto T

Rice
  6 (1): 1-10; Feb 6 2013   Springer
[Abstract]
[DOI] [Full Text]

The tomato genome sequence provides insights into fleshy fruit evolution
Sato S,
Tabata S,
Hirakawa H,
Asamizu E,
Shirasawa K,
Isobe S,
Kaneko T,
Nakamura Y,
Shibata D,
Aoki K,
Egholm M,
Knight J,
Bogden R,
Li CB,
Shuang Y,
Xu X,
Pan SK,
Cheng SF,
Liu X,
Ren YY,
Wang J,
Albiero A,
Dal Pero F,
Todesco S,
Van Eck J,
Buels RM,
Bombarely A,
Gosselin JR,
Huang MY,
Leto JA,
Menda N,
Strickler S,
Mao LY,
Gao S,
Tecle IY,
York T,
Zheng Y,
Vrebalov JT,
Lee J,
Zhong SL,
Mueller LA,
Stiekema WJ,
Ribeca P,
Alioto T,
Yang WC,
Huang SW,
Du YC,
Zhang ZH,
Gao JC,
Guo YM,
Wang XX,
Li Y,
He J,
Li CY,
Cheng ZK,
Zuo JR,
Ren JF,
Zhao JH,
Yan LH,
Jiang HL,
Wang B,
Li HS,
Li ZJ,
Fu FY,
Chen BT,
Han B,
Feng Q,
Fan DL,
Wang Y,
Ling HQ,
Xue YB,
Ware D,
McCombie WR,
Lippman ZB,
Chia JM,
Jiang K,
Pasternak S,
Gelley L,
Kramer M,
Anderson LK,
Chang SB,
Royer SM,
Shearer LA,
Stack SM,
Rose JK,
Xu YM,
Eannetta N,
Matas AJ,
McQuinn R,
Tanksley SD,
Camara F,
Guigo R,
Rombauts S,
Fawcett J,
Van de Peer Y,
Zamir D,
Liang CB,
Spannagl M,
Gundlach H,
Bruggmann R,
Mayer K,
Jia ZQ,
Zhang JH,
Ye ZB,
Bishop GJ,
Butcher S,
Lopez-Cobollo R,
Buchan D,
Filippis I,
Abbott J,
Dixit R,
Singh M,
Singh A,
Pal JK,
Pandit A,
Singh PK,
Mahato AK,
Dogra V,
Gaikwad K,
Sharma TR,
Mohapatra T,
Singh NK,
Causse M,
Rothan C,
Schiex T,
Noirot C,
Bellec A,
Klopp C,
Delalande C,
Berges H,
Mariette J,
Frasse P,
Vautrin S,
Zouine M,
Latche A,
Rousseau C,
Regad F,
Pech JC,
Philippot M,
Bouzayen M,
Pericard P,
Osorio S,
del Carmen AF,
Monforte A,
Granell A,
Fernandez-Munoz R,
Conte M,
Lichtenstein G,
Carrari F,
De Bellis G,
Fuligni F,
Peano C,
Grandillo S,
Termolino P,
Pietrella M,
Fantini E,
Falcone G,
Fiore A,
Giuliano G,
Lopez L,
Facella P,
Perrotta G,
Daddiego L,
Bryan G,
Orozco M,
Pastor X,
Torrents D,
van Schriek K,
Feron RM,
van Oeveren J,
de Heer P,
daPonte L,
Jacobs-Oomen S,
Cariaso M,
Prins M,
van Eijk MJ,
Janssen A,
van Haaren MJ,
Jo SH,
Kim J,
Kwon SY,
Kim S,
Koo DH,
Lee S,
Hur CG,
Clouser C,
Rico A,
Hallab A,
Gebhardt C,
Klee K,
Jocker A,
Warfsmann J,
Gobel U,
Kawamura S,
Yano K,
Sherman JD,
Fukuoka H,
Negoro S,
Bhutty S,
Chowdhury P,
Chattopadhyay D,
Datema E,
Smit S,
Schijlen EW,
van de Belt J,
van Haarst JC,
Peters SA,
van Staveren MJ,
Henkens MH,
Mooyman PJ,
Hesselink T,
van Ham R,
Jiang GY,
Droege M,
Choi D,
Kang BC,
Kim BD,
Park M,
Yeom SI,
Lee YH,
Choi YD,
Li GC,
Gao JW,
Liu YS,
Huang SX,
Fernandez-Pedrosa V,
Collado C,
Zuniga S,
Wang GP,
Cade R,
Dietrich RA,
Rogers J,
Knapp S,
Fei ZJ,
White RA,
Thannhauser TW,
Giovannoni JJ,
Botella MA,
Gilbert L,
Gonzalez R,
Goicoechea JL,
Yu Y,
Kudrna D,
Collura K,
Wissotski M,
Wing R,
Schoof H,
Meyers BC,
Gurazada AB,
Green PJ,
Mathur S,
Vyas S,
Solanke AU,
Kumar R,
Gupta V,
Sharma AK,
Khurana P,
Khurana JP,
Tyagi AK,
Dalmay T,
Mohorianu I,
Walts B,
Chamala S,
Barbazuk WB,
Li JP,
Guo H,
Lee TH,
Wang YP,
Zhang D,
Paterson AH,
Wang XY,
Tang HB,
Barone A,
Chiusano ML,
Ercolano MR,
DAgostino N,
Di Filippo M,
Traini A,
Sanseverino W,
Frusciante L,
Seymour GB,
Elharam M,
Fu Y,
Hua A,
Kenton S,
Lewis J,
Lin SP,
Najar F,
Lai HS,
Qin BF,
Qu CM,
Shi RH,
White D,
White J,
Xing YB,
Yang KQ,
Yi J,
Yao ZY,
Zhou LP,
Roe BA,
Vezzi A,
DAngelo M,
Zimbello R,
Schiavon R,
Caniato E,
Rigobello C,
Campagna D,
Vitulo N,
Valle G,
Nelson DR,
De Paoli E,
Szinay D,
de Jong HH,
Bai YL,
Visser RG,
Lankhorst RM,
Beasley H,
McLaren K,
Nicholson C,
Riddle C,
Gianese G

Nature
  485 (7400): 635-641; May 2012  
[Abstract]
[DOI] [Full Text]

Chaperonins Facilitate KNOTTED1 Cell-to-Cell Trafficking and Stem Cell Function
Xu XM,
Wang J,
Xuan ZY,
Goldshmidt A,
Borrill PG,
Hariharan N,
Kim JY,
Jackson DP

Science
  333 (6046): 1141-1144; Aug 26 2011   NLM
[Abstract]
[DOI]

Romo1 is a negative-feedback regulator of Myc
Lee SB,
Kim JJ,
Chung JS,
Lee MS,
Lee KH,
Kim BS,
Tansey WP,
Yoo YD

Journal of Cell Science
  124 (11): 1911-1924; Jun 1 2011  
[Abstract]
[DOI]

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Gerstein MB,
Lu ZJ,
Van Nostrand EL,
Cheng C,
Arshinoff BI,
Liu T,
Yip KY,
Robilotto R,
Rechtsteiner A,
Ikegami K,
Alves P,
Chateigner A,
Perry M,
Morris M,
Auerbach RK,
Feng X,
Leng J,
Vielle A,
Niu W,
Rhrissorrakrai K,
Agarwal A,
Alexander RP,
Barber G,
Brdlik CM,
Brennan J,
Brouillet JJ,
Carr A,
Cheung MS,
Clawson H,
Contrino S,
Dannenberg LO,
Dernburg AF,
Desai A,
Dick L,
Dose AC,
Du JA,
Egelhofer T,
Ercan S,
Euskirchen G,
Ewing B,
Feingold EA,
Gassmann R,
Good PJ,
Green P,
Gullier F,
Gutwein M,
Guyer MS,
Habegger L,
Han T,
Henikoff JG,
Henz SR,
Hinrichs A,
Holster H,
Hyman T,
Iniguez AL,
Janette J,
Jensen M,
Kato M,
Kent WJ,
Kephart E,
Khivansara V,
Khurana E,
Kim JK,
Kolasinska-Zwierz P,
Lai EC,
Latorre I,
Leahey A,
Lewis S,
Lloyd P,
Lochovsky L,
Lowdon RF,
Lubling Y,
Lyne R,
MacCoss M,
Mackowiak SD,
Mangone M,
McKay SJ,
Mecenas D,
Merrihew G,
Miller DM,
Muroyama A,
Murray JI,
Ooi SL,
Pham H,
Phippen T,
Preston EA,
Rajewsky N,
Ratsch G,
Rosenbaum H,
Rozowsky J,
Rutherford K,
Ruzanov P,
Sarov M,
Sasidharan R,
Sboner A,
Scheid P,
Segal E,
Shin HJ,
Shou C,
Slack FJ,
Slightam C,
Smith R,
Spencer WC,
Stinson EO,
Taing S,
Takasaki T,
Vafeados D,
Voronina K,
Wang GL,
Washington NL,
Whittle CM,
Wu BJ,
Yan KK,
Zeller G,
Zha Z,
Zhong M,
Zhou XL,
Ahringer J,
Strome S,
Gunsalus KC,
Micklem G,
Liu XS,
Reinke V,
Kim SK,
Hillier LW,
Henikoff S,
Piano F,
Snyder M,
Stein LD,
Lieb JD,
Waterston RH

Science
  330 (6012): 1775-1787; Dec 2010   PMC3142569
[Abstract]
[DOI] [Full Text] [PDF]

Crystal structure of ED-Eya2: insight into dual roles as a protein tyrosine phosphatase and a transcription factor
Jung SK,
Jeong DG,
Chung SJ,
Kim JH,
Park BC,
Tonks NK,
Ryu SE,
Kim SJ

FASEB J.
  24 (2): 560-569; Feb 2010  
[Abstract]
[DOI] [Full Text] [PDF]

A non-cell-autonomous mechanism for the control of plant architecture and epidermal differentiation involves intercellular trafficking of BREVIPEDICELLUS protein
Rim Y,
Jung JH,
Chu H,
Cho WK,
Kim SW,
Hong JC,
Jackson DP,
Datla R,
Kim JY

Functional Plant Biology
  36 (3): 280-289; Mar 2 2009  
[Abstract]
[DOI] [Full Text]

Anti-tumor activity mediated by protein and peptide transduction of HIV viral protein R (Vpr)
Muthumani K,
Lambert VM,
Shanmugam M,
Thieu KP,
Choo AY,
Chung JC,
Satishchandran A,
Kim JJ,
Weiner DB,
Ugen KE

Cancer Biology and Therapy
  8 (2): 180-187; Jan 2009  
[Abstract]
[DOI] [Full Text]

DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells
Steger DJ,
Lefterova MI,
Ying L,
Stonestrom AJ,
Schupp M,
Zhuo D,
Vakoc AL,
Kim JE,
Chen J,
Lazar MA,
Blobel GA,
Vakoc CR

Molecular and Cellular Biology
  28 (8): 2825-2839; 2008  
[Abstract]
[DOI] [Full Text]

A MicroRNA feedback circuit in midbrain dopamine neurons
Kim J,
Inoue K,
Ishii J,
Vanti WB,
Voronov SV,
Murchison E,
Hannon GJ,
Abeliovich A

Science
  317 (5842): 1220-4; Aug 31 2007   PMCID: PMC2782470
[Abstract]
[DOI] [Full Text] [PDF]

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney E,
Stamatoyannopoulos JA,
Dutta A,
Guigó R,
Gingeras TR,
Margulies EH,
Weng Z,
Snyder M,
Dermitzakis ET,
Thurman RE,
Kuehn MS,
Taylor CM,
Neph S,
Koch CM,
Asthana S,
Malhotra A,
Adzhubei I,
Greenbaum JA,
Andrews RM,
Flicek P,
Boyle PJ,
Cao H,
Carter NP,
Clelland GK,
Davis S,
Day N,
Dhami P,
Dillon SC,
Dorschner MO,
Fiegler H,
Giresi PG,
Goldy J,
Hawrylycz M,
Haydock A,
Humbert R,
James KD,
Johnson BE,
Johnson EM,
Frum TT,
Rosenzweig ER,
Karnani N,
Lee K,
Lefebvre GC,
Navas PA,
Neri F,
Parker SC,
Sabo PJ,
Sandstrom R,
Shafer A,
Vetrie D,
Weaver M,
Wilcox S,
Yu M,
Collins FS,
Dekker J,
Lieb JD,
Tullius TD,
Crawford GE,
Sunyaev S,
Noble WS,
Dunham I,
Denoeud F,
Reymond A,
Kapranov P,
Rozowsky J,
Zheng D,
Castelo R,
Frankish A,
Harrow J,
Ghosh S,
Sandelin A,
Hofacker IL,
Baertsch R,
Keefe D,
Dike S,
Cheng J,
Hirsch HA,
Sekinger EA,
Lagarde J,
Abril JF,
Shahab A,
Flamm C,
Fried C,
Hackermüller J,
Hertel J,
Lindemeyer M,
Missal K,
Tanzer A,
Washietl S,
Korbel J,
Emanuelsson O,
Pedersen JS,
Holroyd N,
Taylor R,
Swarbreck D,
Matthews N,
Dickson MC,
Thomas DJ,
Weirauch MT,
Gilbert J,
Drenkow J,
Bell I,
Zhao X,
Srinivasan KG,
Sung WK,
Ooi HS,
Chiu KP,
Foissac S,
Alioto T,
Brent M,
Pachter L,
Tress ML,
Valencia A,
Choo SW,
Choo CY,
Ucla C,
Manzano C,
Wyss C,
Cheung E,
Clark TG,
Brown JB,
Ganesh M,
Patel S,
Tammana H,
Chrast J,
Henrichsen CN,
Kai C,
Kawai J,
Nagalakshmi U,
Wu J,
Lian Z,
Lian J,
Newburger P,
Zhang X,
Bickel P,
Mattick JS,
Carninci P,
Hayashizaki Y,
Weissman S,
Hubbard T,
Myers RM,
Rogers J,
Stadler PF,
Lowe TM,
Wei CL,
Ruan Y,
Struhl K,
Gerstein M,
Antonarakis SE,
Fu Y,
Green ED,
Karaöz U,
Siepel A,
Taylor J,
Liefer LA,
Wetterstrand KA,
Good PJ,
Feingold EA,
Guyer MS,
Cooper GM,
Asimenos G,
Dewey CN,
Hou M,
Nikolaev S,
Montoya-Burgos JI,
Löytynoja A,
Whelan S,
Pardi F,
Massingham T,
Huang H,
Zhang NR,
Holmes I,
Mullikin JC,
Ureta-Vidal A,
Paten B,
Seringhaus M,
Church D,
Rosenbloom K,
Kent WJ,
Stone EA,
Batzoglou S,
Goldman N,
Hardison RC,
Haussler D,
Miller W,
Sidow A,
Trinklein ND,
Zhang ZD,
Barrera L,
Stuart R,
King DC,
Ameur A,
Enroth S,
Bieda MC,
Kim J,
Bhinge AA,
Jiang N,
Liu J,
Yao F,
Vega VB,
Lee CW,
Ng P,
Yang A,
Moqtaderi Z,
Zhu Z,
Xu X,
Squazzo S,
Oberley MJ,
Inman D,
Singer MA,
Richmond TA,
Munn KJ,
Rada-Iglesias A,
Wallerman O,
Komorowski J,
Fowler JC,
Couttet P,
Bruce AW,
Dovey OM,
Ellis PD,
Langford CF,
Nix DA,
Euskirchen G,
Hartman S,
Urban AE,
Kraus P,
Van Calcar S,
Heintzman N,
Hoon Kim T,
Wang K,
Qu C,
Hon G,
Luna R,
Glass CK,
Rosenfeld MG,
Aldred SF,
Cooper SJ,
Halees A,
Lin JM,
Shulha HP,
Xu M,
Haidar JN,
Yu Y,
Iyer VR,
Green RD,
Wadelius C,
Farnham PJ,
Ren B,
Harte RA,
Hinrichs AS,
Trumbower H,
Clawson H,
Hillman-Jackson J,
Zweig AS,
Smith K,
Thakkapallayil A,
Barber G,
Kuhn RM,
Karolchik D,
Armengol L,
Bird CP,
De Bakker PI,
Kern AD,
Lopez-Bigas N,
Martin JD,
Stranger BE,
Woodroffe A,
Davydov E,
Dimas A,
Eyras E,
Hallgrímsdóttir IB,
Huppert J,
Zody MC,
Abecasis GR,
Estivill X,
Bouffard GG,
Guan X,
Hansen NF,
Idol JR,
Maduro VV,
Maskeri B,
McDowell JC,
Park M,
Thomas PJ,
Young AC,
Blakesley RW,
Muzny DM,
Sodergren E,
Wheeler DA,
Worley KC,
Jiang H,
Weinstock GM,
Gibbs RA,
Graves T,
Fulton R,
Mardis ER,
Wilson RK,
Clamp M,
Cuff J,
Gnerre S,
Jaffe DB,
Chang JL,
Lindblad-Toh K,
Lander ES,
Koriabine M,
Nefedov M,
Osoegawa K,
Yoshinaga Y,
Zhu B,
De Jong PJ

Nature
  447 (7146): 799-816; 2007  
[Abstract]
[DOI] [Full Text]

Artificial zinc finger fusions targeting Sp1-binding sites and the trans-activator-responsive element potently repress transcription and replication of HIV-1
Kim YS,
Kim JM,
Jung DL,
Kang JE,
Lee S,
Kim JS,
Seol W,
Shin HC,
Kwon HS,
Van Lint C,
Hernandez N,
Hur MW

Journal of Biological Chemistry
  280 (22): 21545-21552; Jun 2005  
[Abstract]
[Full Text]

A novel cell-to-cell trafficking assay indicates that the KNOX homeodomain is necessary and sufficient for intercellular protein and mRNA trafficking
Kim JY,
Rim Y,
Wang L,
Jackson D

Genes Development
  19 (7): 788-793; Apr 2005  
[Abstract]
[Full Text]

Actin/alpha-actinin-dependent transport of AMPA receptors in dendritic spines: role of the PDZ-LIM protein RIL
Schulz TW,
Nakagawa T,
Licznerski P,
Pawlak V,
Kolleker A,
Rozov A,
Kim J,
Dittgen T,
Kohr G,
Sheng M,
Seeburg PH,
Osten P

J Neurosci
  24 (39): 8584-94; Sep 29 2004  
[Abstract]
[DOI] [Full Text] [PDF]

Sindbis vector SINrep(nsP2S726): a tool for rapid heterologous expression with attenuated cytotoxicity in neurons
Kim J,
Dittgen T,
Nimmerjahn A,
Waters J,
Pawlak V,
Helmchen F,
Schlesinger S,
Seeburg PH,
Osten P

J Neurosci Methods
  133 (1): 81-90; Feb 15 2004  
[Abstract]
[DOI] [Full Text] [PDF]

Developmental regulation and significance of KNOX protein trafficking in Arabidopsis
Kim JY,
Yuan Z,
Jackson D

Development
  130 (18): 4351-4362; Sep 2003  
[Abstract]
[Full Text]

Intercellular signaling: an elusive player steps forth
Jackson D,
Kim JY

Curr Biol
  13 (9): R349-50; Apr 29 2003  
[Abstract]
[DOI]

Intercellular trafficking of a KNOTTED1 green fluorescent protein fusion in the leaf and shoot meristem of Arabidopsis
Kim JY,
Yuan ZA,
Cilia M,
Khalfan-Jagani Z,
Jackson D

Proceedings of the National Academy of Sciences of the United States of America
  99 (6): 4103-4108; Mar 2002  
[DOI] [Full Text]

Increased Expression of S100-Beta in Brain of Im Mice Injected with 87v Scrapie Strain
Kim YS,
Choi EK,
Yang HM,
Kim J,
Yu IJ,
Marshak DR,
Carp RI,
Wisniewski HM

Neurobiology of Aging
  15 (0): S89-S89; 1994  


Crystal Structures of the Iron Protein and Molybdenum-Iron Protein of Nitrogenase
Rees DC,
Kim J,
Georgiadis MM,
Komiya H,
Chirino AJ,
Woo D,
Schlessman J,
Chan MK,
Joshua-Tor L,
Santillan G,
Chakrabarti P,
Hsu BT
In:
Molybdenum Enzymes, Cofactors, and Model Systems
(eds. Stiefl, E. I. Coucouvanis, D Newton, W. E.) : American Chemical So; 1993. 535: 170-185  
[DOI] [Full Text]


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