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5 Article(s) on File
Page 1 of 1
A promoter-level mammalian expression atlas
Forest AR,
Kawaji H,
Rehli M,
Baillie JK,
De Hoon MJ,
Haberle V,
Lassmann T,
Kulakovskiy IV,
Lizio M,
Itoh M,
Andersson R,
Mungall CJ,
Meehan TF,
Schmeier S,
Bertin N,
Jørgensen M,
Dimont E,
Arner E,
Schmidl C,
Schaefer U,
Medvedeva YA,
Plessy C,
Vitezic M,
Severin J,
Semple CA,
Ishizu Y,
Young RS,
Francescatto M,
Altschuler IA,
Albanese D,
Altschule GM,
Arakawa T,
Archer JA,
Arner P,
Babina M,
Rennie S,
Balwierz PJ,
Beckhouse AG,
Pradhan-Bhatt S,
Blake JA,
Blumenthal A,
Bodega B,
Bonetti A,
Briggs J,
Brombacher F,
Burroughs AM,
Califano A,
Cannistraci CV,
Carbajo D,
Chen Y,
Chierici M,
Ciani Y,
Clevers HC,
Dalla E,
Davis CA,
Detmar M,
Diehl AD,
Dohi T,
Drabløs F,
Edge AS,
Edinger M,
Ekwall K,
Endoh M,
Enomoto H,
Fagiolini M,
Fairbairn L,
Fang H,
Farach-Carson MC,
Faulkner GJ,
Favorov AV,
Fisher ME,
Frith MC,
Fujita R,
Fukuda S,
Furlanello C,
Furuno M,
Furusawa JI,
Geijtenbeek TB,
Gibson AP,
Gingeras T,
Goldowitz D,
Gough J,
Guhl S,
Guler R,
Gustincich S,
Ha TJ,
Hamaguchi M,
Hara M,
Harbers M,
Harshbarger J,
Hasegawa A,
Hasegawa Y,
Hashimoto T,
Herlyn M,
Hitchens KJ,
Sui SJ,
Hofmann OM,
Hoof I,
Hori F,
Huminiecki L,
Iida K,
Ikawa T,
Jankovic BR,
Jia H,
Joshi A,
Jurman G,
Kaczkowski B,
Kai C,
Kaida K,
Kaiho A,
Kajiyama K,
Kanamori-Katayama M,
Kasianov AS,
Kasukawa T,
Katayama S,
Kato S,
Kawaguchi S,
Kawamoto H,
Kawamura YI,
Kawashima T,
Kempfle JS,
Kenna TJ,
Kere J,
Khachigian LM,
Kitamura T,
Klinken SP,
Knox AJ,
Kojima M,
Kojima S,
Kondo N,
Koseki H,
Koyasu S,
Krampitz S,
Kubosaki A,
Kwon AT,
Laros JF,
Lee W,
Lennartsson A,
Li K,
Lilje B,
Lipovich L,
Mackay-sim A,
Manabe RI,
Mar JC,
Marchand B,
Mathelier A,
Mejhert N,
Meynert A,
Mizuno Y,
De Morais DA,
Morikawa H,
Morimoto M,
Moro K,
Motakis E,
Motohashi H,
Mummery CL,
Murata M,
Nagao-Sato S,
Nakachi Y,
Nakahara F,
Nakamura T,
Nakamura Y,
Nakazato K,
Van Nimwegen E,
Ninomiya N,
Nishiyori H,
Noma S,
Nozaki T,
Ogishima S,
Ohkura N,
Ohmiya H,
Ohno H,
Ohshima M,
Okada-Hatakeyama M,
Okazaki Y,
Orlando V,
Ovchinnikov DA,
Pain A,
Passier R,
Patrikakis M,
Persson H,
Piazza S,
Prendergast JG,
Rackham OJ,
Ramilowski JA,
Rashid M,
Ravasi T,
Rizzu P,
Roncador M,
Roy S,
Rye MB,
Saijyo E,
Sajantila A,
Saka A,
Sakaguchi S,
Sakai M,
Sato H,
Satoh H,
Savvi S,
Saxena A,
Schneider C,
Schultes EA,
Schulze-Tanzil GG,
Schwegmann A,
Sengstag T,
Sheng G,
Shimoji H,
Shimoni Y,
Shin JW,
Simon C,
Sugiyama D,
Sugiyama T,
Suzuki M,
Suzuki N,
Swoboda RK,
T Hoen PA,
Tagami M,
Tagami NT,
Takai J,
Tanaka H,
Tatsukawa H,
Tatum Z,
Thompson M,
Toyoda H,
Toyoda T,
Valen E,
Van De Wetering M,
Van Den Berg LM,
Verardo R,
Vijayan D,
Vorontsov IE,
Wasserman WW,
Watanabe S,
Wells CA,
Winteringham LN,
Wolvetang E,
Wood EJ,
Yamaguchi Y,
Yamamoto M,
Yoneda M,
Yonekura Y,
Yoshida S,
Zabierowski SE,
Zhang PG,
Zhao X,
Zucchelli S,
Summers KM,
Suzuki H,
Daub CO,
Kawai J,
Heutink P,
Hide W,
Freeman TC,
Lenhard B,
Bajic LV,
Taylor MS,
Makeev VJ,
Sandelin A,
Hume DA,
Carninci P,
Hayashizaki Y

Nature
  507 (7493): 462-470; Mar 27 2014   NLM
[DOI] [Full Text]

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
Plessy C,
Bertin N,
Takahashi H,
Simone R,
Salimullah M,
Lassmann T,
Vitezic M,
Severin J,
Olivarius S,
Lazarevic D,
Hornig N,
Orlando V,
Bell I,
Gao H,
Dumais J,
Kapranov P,
Wang H,
Davis CA,
Gingeras TR,
Kawai J,
Daub CO,
Hayashizaki Y,
Gustincich S,
Carninci P

Nat Meth
  (0): Jun 13 2010   PMCID: PMC2906222
[Abstract]
[DOI] [Full Text] [PDF]

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney E,
Stamatoyannopoulos JA,
Dutta A,
Guigó R,
Gingeras TR,
Margulies EH,
Weng Z,
Snyder M,
Dermitzakis ET,
Thurman RE,
Kuehn MS,
Taylor CM,
Neph S,
Koch CM,
Asthana S,
Malhotra A,
Adzhubei I,
Greenbaum JA,
Andrews RM,
Flicek P,
Boyle PJ,
Cao H,
Carter NP,
Clelland GK,
Davis S,
Day N,
Dhami P,
Dillon SC,
Dorschner MO,
Fiegler H,
Giresi PG,
Goldy J,
Hawrylycz M,
Haydock A,
Humbert R,
James KD,
Johnson BE,
Johnson EM,
Frum TT,
Rosenzweig ER,
Karnani N,
Lee K,
Lefebvre GC,
Navas PA,
Neri F,
Parker SC,
Sabo PJ,
Sandstrom R,
Shafer A,
Vetrie D,
Weaver M,
Wilcox S,
Yu M,
Collins FS,
Dekker J,
Lieb JD,
Tullius TD,
Crawford GE,
Sunyaev S,
Noble WS,
Dunham I,
Denoeud F,
Reymond A,
Kapranov P,
Rozowsky J,
Zheng D,
Castelo R,
Frankish A,
Harrow J,
Ghosh S,
Sandelin A,
Hofacker IL,
Baertsch R,
Keefe D,
Dike S,
Cheng J,
Hirsch HA,
Sekinger EA,
Lagarde J,
Abril JF,
Shahab A,
Flamm C,
Fried C,
Hackermüller J,
Hertel J,
Lindemeyer M,
Missal K,
Tanzer A,
Washietl S,
Korbel J,
Emanuelsson O,
Pedersen JS,
Holroyd N,
Taylor R,
Swarbreck D,
Matthews N,
Dickson MC,
Thomas DJ,
Weirauch MT,
Gilbert J,
Drenkow J,
Bell I,
Zhao X,
Srinivasan KG,
Sung WK,
Ooi HS,
Chiu KP,
Foissac S,
Alioto T,
Brent M,
Pachter L,
Tress ML,
Valencia A,
Choo SW,
Choo CY,
Ucla C,
Manzano C,
Wyss C,
Cheung E,
Clark TG,
Brown JB,
Ganesh M,
Patel S,
Tammana H,
Chrast J,
Henrichsen CN,
Kai C,
Kawai J,
Nagalakshmi U,
Wu J,
Lian Z,
Lian J,
Newburger P,
Zhang X,
Bickel P,
Mattick JS,
Carninci P,
Hayashizaki Y,
Weissman S,
Hubbard T,
Myers RM,
Rogers J,
Stadler PF,
Lowe TM,
Wei CL,
Ruan Y,
Struhl K,
Gerstein M,
Antonarakis SE,
Fu Y,
Green ED,
Karaöz U,
Siepel A,
Taylor J,
Liefer LA,
Wetterstrand KA,
Good PJ,
Feingold EA,
Guyer MS,
Cooper GM,
Asimenos G,
Dewey CN,
Hou M,
Nikolaev S,
Montoya-Burgos JI,
Löytynoja A,
Whelan S,
Pardi F,
Massingham T,
Huang H,
Zhang NR,
Holmes I,
Mullikin JC,
Ureta-Vidal A,
Paten B,
Seringhaus M,
Church D,
Rosenbloom K,
Kent WJ,
Stone EA,
Batzoglou S,
Goldman N,
Hardison RC,
Haussler D,
Miller W,
Sidow A,
Trinklein ND,
Zhang ZD,
Barrera L,
Stuart R,
King DC,
Ameur A,
Enroth S,
Bieda MC,
Kim J,
Bhinge AA,
Jiang N,
Liu J,
Yao F,
Vega VB,
Lee CW,
Ng P,
Yang A,
Moqtaderi Z,
Zhu Z,
Xu X,
Squazzo S,
Oberley MJ,
Inman D,
Singer MA,
Richmond TA,
Munn KJ,
Rada-Iglesias A,
Wallerman O,
Komorowski J,
Fowler JC,
Couttet P,
Bruce AW,
Dovey OM,
Ellis PD,
Langford CF,
Nix DA,
Euskirchen G,
Hartman S,
Urban AE,
Kraus P,
Van Calcar S,
Heintzman N,
Hoon Kim T,
Wang K,
Qu C,
Hon G,
Luna R,
Glass CK,
Rosenfeld MG,
Aldred SF,
Cooper SJ,
Halees A,
Lin JM,
Shulha HP,
Xu M,
Haidar JN,
Yu Y,
Iyer VR,
Green RD,
Wadelius C,
Farnham PJ,
Ren B,
Harte RA,
Hinrichs AS,
Trumbower H,
Clawson H,
Hillman-Jackson J,
Zweig AS,
Smith K,
Thakkapallayil A,
Barber G,
Kuhn RM,
Karolchik D,
Armengol L,
Bird CP,
De Bakker PI,
Kern AD,
Lopez-Bigas N,
Martin JD,
Stranger BE,
Woodroffe A,
Davydov E,
Dimas A,
Eyras E,
Hallgrímsdóttir IB,
Huppert J,
Zody MC,
Abecasis GR,
Estivill X,
Bouffard GG,
Guan X,
Hansen NF,
Idol JR,
Maduro VV,
Maskeri B,
McDowell JC,
Park M,
Thomas PJ,
Young AC,
Blakesley RW,
Muzny DM,
Sodergren E,
Wheeler DA,
Worley KC,
Jiang H,
Weinstock GM,
Gibbs RA,
Graves T,
Fulton R,
Mardis ER,
Wilson RK,
Clamp M,
Cuff J,
Gnerre S,
Jaffe DB,
Chang JL,
Lindblad-Toh K,
Lander ES,
Koriabine M,
Nefedov M,
Osoegawa K,
Yoshinaga Y,
Zhu B,
De Jong PJ

Nature
  447 (7146): 799-816; 2007  
[Abstract]
[DOI] [Full Text]

The transcriptional landscape of the mammalian genome
Carninci P,
Kasukawa T,
Katayama S,
Gough J,
Frith MC,
Maeda N,
Oyama R,
Ravasi T,
Lenhard B,
Wells C,
Kodzius R,
Shimokawa K,
Bajic VB,
Brenner SE,
Batalov S,
Forrest AR,
Zavolan M,
Davis MJ,
Wilming LG,
Aidinis V,
Allen JE,
Ambesi-Impiombato A,
Apweiler R,
Aturaliya RN,
Bailey TL,
Bansal M,
Baxter L,
Beisel KW,
Bersano T,
Bono H,
Chalk AM,
Chiu KP,
Choudhary V,
Christoffels A,
Clutterbuck DR,
Crowe ML,
Dalla E,
Dalrymple BP,
de Bono B,
della Gatta G,
di Bernardo D,
Down T,
Engstrom P,
Fagiolini M,
Faulkner G,
Fletcher CF,
Fukushima T,
Furuno M,
Futaki S,
Gariboldi M,
Georgii-Hemming P,
Gingeras TR,
Gojobori T,
Green RE,
Gustincich S,
Harbers M,
Hayashi Y,
Hensch TK,
Hirokawa N,
Hill D,
Huminiecki L,
Iacono M,
Ikeo K,
Iwama A,
Ishikawa T,
Jakt M,
Kanapin A,
Katoh M,
Kawasawa Y,
Kelso J,
Kitamura H,
Kitano H,
Kollias G,
Krishnan SP,
Kruger AF,
Kummerfeld SK,
Kurochkin IV,
Lareau LF,
Lazarevic D,
Lipovich L,
Liu J,
Liuni S,
McWilliam S,
Madan Babu M,
Madera M,
Marchionni L,
Matsuda H,
Matsuzawa S,
Miki H,
Mignone F,
Miyake S,
Morris K,
Mottagui-Tabar S,
Mulder N,
Nakano N,
Nakauchi H,
Ng P,
Nilsson R,
Nishiguchi S,
Nishikawa S,
Nori F,
Ohara O,
Okazaki Y,
Orlando V,
Pang KC,
Pavan WJ,
Pavesi G,
Pesole G,
Petrovsky N,
Piazza S,
Reed J,
Reid JF,
Ring BZ,
Ringwald M,
Rost B,
Ruan Y,
Salzberg SL,
Sandelin A,
Schneider C,
Schönbach C,
Sekiguchi K,
Semple CA,
Seno S,
Sessa L,
Sheng Y,
Shibata Y,
Shimada H,
Shimada K,
Silva D,
Sinclair B,
Sperling S,
Stupka E,
Sugiura K,
Sultana R,
Takenaka Y,
Taki K,
Tammoja K,
Tan SL,
Tang S,
Taylor MS,
Tegner J,
Teichmann SA,
Ueda HR,
van Nimwegene E,
Verardo R,
Wei CL,
Yagi K,
Yamanishi H,
Zabarovsky E,
Zhu S,
Zimmer A,
Hide W,
Bult C,
Grimmond SM,
Teasdale RD,
Liu ET,
Brusic V,
Quackenbush J,
Wahlestedt C,
Mattick JS,
Hume DA,
Kai C,
Sasaki D,
Tomaru Y,
Fukuda S,
Kanamori-Katayama M,
Suzuki M,
Aoki J,
Arakawa T,
Iida J,
Imamura K,
Itoh M,
Kato T,
Kawaji H,
Kawagashira N,
Kawashima T,
Kojima M,
Kondo S,
Konno H,
Nakano K,
Ninomiya N,
Nishio T,
Okada M,
Plessy C,
Shibata K,
Shiraki T,
Suzuki S,
Tagami M,
Waki K,
Watahiki A,
Okamura-Oho Y,
Suzuki H,
Kawai J,
Hayashizaki Y

Science
  309 (5740): 1559-1563; 2005  
[Abstract]
[Full Text]

Initial sequencing and comparative analysis of the mouse genome
Waterston RH,
Lindblad-Toh K,
Birney E,
Rogers J,
Abril JF,
Agarwal P,
Agarwala R,
Ainscough R,
Alexandersson M,
An P,
Antonarakis SE,
Attwood J,
Baertsch R,
Bailey J,
Barlow K,
Beck S,
Berry E,
Birren B,
Bloom T,
Bork P,
Botcherby M,
Bray N,
Brent MR,
Brown DG,
Brown SD,
Bult C,
Burton J,
Butler J,
Campbell RD,
Carninci P,
Cawley S,
Chiaromonte F,
Chinwalla AT,
Church DM,
Clamp M,
Clee C,
Collins FS,
Cook LL,
Copley RR,
Coulson A,
Couronne O,
Cuff J,
Curwen V,
Cutts T,
Daly M,
David R,
Davies J,
Delehaunty KD,
Deri J,
Dermitzakis ET,
Dewey C,
Dickens NJ,
Diekhans M,
Dodge S,
Dubchak I,
Dunn DM,
Eddy SR,
Elnitski L,
Emes RD,
Eswara P,
Eyras E,
Felsenfeld A,
Fewell GA,
Flicek P,
Foley K,
Frankel WN,
Fulton LA,
Fulton RS,
Furey TS,
Gage D,
Gibbs RA,
Glusman G,
Gnerre S,
Goldman N,
Goodstadt L,
Grafham D,
Graves TA,
Green ED,
Gregory S,
Guigo R,
Guyer M,
Hardison RC,
Haussler D,
Hayashizaki Y,
Hillier LW,
Hinrichs A,
Hlavina W,
Holzer T,
Hsu F,
Hua A,
Hubbard T,
Hunt A,
Jackson I,
Jaffe DB,
Johnson LS,
Jones M,
Jones TA,
Joy A,
Kamal M,
Karlsson EK,
Karolchik D,
Kasprzyk A,
Kawai J,
Keibler E,
Kells C,
Kent WJ,
Kirby A,
Kolbe DL,
Korf I,
Kucherlapati RS,
Kulbokas EJ,
Kulp D,
Landers T,
Leger JP,
Leonard S,
Letunic I,
Levine R,
Li J,
Li M,
Lloyd C,
Lucas S,
Ma B,
Maglott DR,
Mardis ER,
Matthews L,
Mauceli E,
Mayer JH,
McCarthy M,
McCombie WR,
McLaren S,
McLay K,
McPherson JD,
Meldrim J,
Meredith B,
Mesirov JP,
Miller W,
Miner TL,
Mongin E,
Montgomery KT,
Morgan M,
Mott R,
Mullikin JC,
Muzny DM,
Nash WE,
Nelson JO,
Nhan MN,
Nicol R,
Ning Z,
Nusbaum C,
OConnor MJ,
Okazaki Y,
Oliver K,
Larty EO,
Pachter L,
Parra G,
Pepin KH,
Peterson J,
Pevzner P,
Plumb R,
Pohl CS,
Poliakov A,
Ponce TC,
Ponting CP,
Potter S,
Quail M,
Reymond A,
Roe BA,
Roskin KM,
Rubin EM,
Rust AG,
Santos R,
Sapojnikov V,
Schultz B,
Schultz J,
Schwartz MS,
Schwartz S,
Scott C,
Seaman S,
Searle S,
Sharpe T,
Sheridan A,
Shownkeen R,
Sims S,
Singer JB,
Slater G,
Smit A,
Smith DR,
Spencer B,
Stabenau A,
Strange-Thomann NS,
Sugnet C,
Suyama M,
Tesler G,
Thompson J,
Torrents D,
Trevaskis E,
Tromp J,
Ucla C,
Vidal AU,
Vinson JP,
von Niederhausern AC,
Wade CM,
Wall M,
Weber RJ,
Weiss RB,
Wendl MC,
West AP,
Wetterstrand K,
Wheeler R,
Whelan S,
Wierzbowski J,
Willey D,
Williams S,
Wilson RK,
Winter E,
Worley KC,
Wyman D,
Yang S,
Yang SP,
Zdobnov EM,
Zody MC,
Lander ES

Nature
  420 (6915): 520-562; Dec 2002  
[Full Text]


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