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14 Article(s) on File
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Gramene 2013: comparative plant genomics resources
Monaco MK,
Stein J,
Naithani S,
Wei S,
Dharmawardhana P,
Kumari S,
Amarasinghe V,
Youens-Clark K,
Thomason J,
Preece J,
Pasternak S,
Olson A,
Jiao Y,
Lu Z,
Bolser D,
Kerhornou A,
Staines D,
Walts B,
Wu G,
DEustachio P,
Haw R,
Croft D,
Kersey PJ,
Stein L,
Jaiswal P,
Ware D

Nucleic Acids Research
  42 (0): D1193-9; Jan 2014   NLM
[Abstract]
[DOI] [Full Text]

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
Dharmawardhana P,
Ren L,
Amarasinghe V,
Monaco M,
Thomason J,
Ravenscroft D,
McCouch S,
Ware D,
Jaiswal P

Rice
  6 (1): 1-15; May 29 2013   Elsevier
[Abstract]
[DOI] [Full Text]

Maize Metabolic Network Construction and Transcriptome Analysis
Monaco MK,
Sen TZ,
Dharmawardhana PD,
Ren L,
Schaeffer M,
Naithani S,
Amarasinghe V,
Thomason J,
Harper L,
Gardiner J,
Cannon EK,
Lawrence CJ,
Ware D,
Jaiswal P

Plant Genome
  6 (1): Mar 2013   Thomson-Reuters
[Abstract]
[DOI] [Full Text]

Taking the Next Step: Building an Arabidopsis Information Portal
Baerenfaller K,
Bastow R,
Beynon J,
Brady S,
Brendel V,
Donaldson S,
Dooley R,
Forster M,
Friesner J,
Gifford D,
Grotewold E,
Gutierrez R,
Huala E,
Jaiswal P,
Joshi H,
Kersey P,
Liu L,
Loraine A,
Lyons E,
May S,
Mayer K,
MacLean D,
Meyers B,
Mueller L,
Muller R,
Muller HM,
Ouellette F,
Pires JC,
Provart N,
Staiger D,
Stanzione D,
Taylor J,
Taylor C,
Town C,
Toyoda T,
Vaughn M,
Walsh S,
Ware D,
Weckwerth W,
Int Arabidopsis I

Plant Cell
  24 (6): 2248-2256; Jun 2012  
[Abstract]
[DOI] [Full Text]

Gramene database in 2010: Updates and extensions
Youens-Clark K,
Buckler E,
Casstevens T,
Chen C,
DeClerck G,
Derwent P,
Dharmawardhana P,
Jaiswal P,
Kersey P,
Karthikeyan AS,
Lu J,
McCouch SR,
Ren L,
Spooner W,
Stein JC,
Thomason J,
Wei S,
Ware DH

Nucleic Acids Research
  39 (0): Jan 2011   PMCID: PMC3013721
[Abstract]
[DOI] [Full Text] [PDF]

Gramene QTL database: development, content and applications
Ni J,
Pujar A,
Youens-Clark K,
Yap IV,
Jaiswal P,
Tecle I,
Tung C,
Ren L,
Spooner W,
Wei X,
Avraham S,
Ware DH,
Stein LD,
McCouch S

Database
  2009 (0): bap005; May 12 2009   PMC2790302
[Abstract]
[DOI] [Full Text] [PDF]

Gramene: a growing plant comparative genomics resource
Liang C,
Jaiswal P,
Hebbard C,
Avraham S,
Buckler ES,
Casstevens T,
Hurwitz BL,
McCouch S,
Ni J,
Pujar A,
Ravenscroft D,
Ren L,
Spooner W,
Tecle I,
Thomason J,
Tung CW,
Wei X,
Yap I,
Youens-Clark K,
Ware DH,
Stein LD

Nucleic Acids Res
  36 (0): D947-53; Jan 2008   PMCID: PMC2238951
[Abstract]
[DOI] [Full Text] [PDF]

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
Avraham S,
Tung CW,
Ilic K,
Jaiswal P,
Kellogg EA,
McCouch S,
Pujar A,
Reiser L,
Rhee SY,
Sachs MM,
Schaeffer M,
Stein LD,
Stevens P,
Vincent L,
Zapata F,
Ware DH

Nucleic Acids Res
  36 (0): D449-54; Jan 2008   PMCID: PMC2238838
[Abstract]
[DOI] [Full Text] [PDF]

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant
Ilic K,
Kellogg EA,
Jaiswal P,
Zapata F,
Stevens PF,
Vincent LP,
Avraham S,
Reiser L,
Pujar A,
Sachs MM,
Whitman NT,
McCouch SR,
Schaeffer ML,
Ware DH,
Stein LD,
Rhee SY

Plant Physiology
  143 (2): 587-599; Feb 2007  
[DOI] [Full Text] [PDF]

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages
Jaiswal P,
Avraham S,
Ilic K,
Kellogg EA,
McCouch S,
Pujar A,
Reiser L,
Rhee SY,
Sachs MM,
Schaeffer M,
Stein L,
Stevens P,
Vincent L,
Ware D,
Zapata F

Comp Funct Genomics
  6 (7): 388-97; 2005   PMCID: PMC2447502
[Abstract]
[DOI] [Full Text] [PDF]

Gramene, a tool for grass Genomics
Ware DH,
Jaiswal PJ,
Ni JJ,
Yap I,
Pan XK,
Clark KY,
Teytelman L,
Schmidt SC,
Zhao W,
Chang K,
Cartinhour S,
Stein LD,
McCouch SR

Plant Physiology
  130 (4): 1606-1613; Dec 2002  
[Abstract]
[DOI] [Full Text]

Gramene: development and integration of trait and gene ontologies for rice
Jaiswal P,
Ware D,
Ni JJ,
Chang K,
Zhao W,
Schmidt S,
Pan XK,
Clark K,
Teytelman L,
Cartinhour S,
Stein L,
McCouch S

Comparative and Functional Genomics
  3 (2): 132-136; Apr 2002  
[Full Text]

The Plant Ontology (TM) Consortium and plant ontologies
Bruskiewich R,
Coe EH,
Jaiswal P,
McCouch S,
Polacco M,
Stein L,
Vincent L,
Ware D

Comparative and Functional Genomics
  3 (2): 137-142; Apr 2002  
[Full Text]

Gramene: a resource for comparative grass genomics
Ware D,
Jaiswal P,
Ni JJ,
Pan XK,
Chang K,
Clark K,
Teytelman L,
Schmidt S,
Zhao W,
Cartinhour S,
McCouch S,
Stein L

Nucleic Acids Research
  30 (1): 103-105; Jan 2002  
[Full Text]


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