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7 Article(s) on File
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PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Feng X,
Grossman R,
Stein LD

Bmc Bioinformatics
  12 (0): May 2011   PMC3103446
[Abstract]
[DOI] [Full Text]

The iPlant Collaborative: Cyberinfrastructure for Plant Biology
Goff SA,
Vaughn M,
McKay ,
Lyons E,
Stapleton AE,
Gessler D,
Matasci N,
Wang L,
Hanlon M,
Lenards A,
Muir A,
Merchant N,
Lowry S,
Mock S,
Helmke M,
Kubach A,
Narro M,
Hopkins N,
Micklos D,
Hilgert U,
Gonzales M,
Jordan C,
Skidmore ,
Dooley R,
Cazes J,
McLay R,
Lu Z,
Pasternak S,
Koesterke L,
Piel WH,
Grene R,
Noutsos C,
Gendler K,
Feng X,
Tang C,
Lent M,
Kim SJ,
Kvilekval K,
Manjunath B,
Tannen V,
Stamatakis ,
Sanderson MJ,
Welch SM,
Cranston K,
Soltis P,
Soltis ,
OMeara B,
Ane C,
Brutnell T,
Kleibenstein DJ,
White JW,
Leebens-Mack J,
Donoghue MJ,
Spalding EP,
Vision TJ,
Myers R,
Lowenthal D,
Enquist BJ,
Boyle B,
Akoglu A,
Andrews G,
Ram S,
Ware D,
Stein L,
Stanzione D

Frontiers in Plant Science
  2 (0): Jan 2011  
[Abstract]
[DOI] [Full Text]

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Roy S,
Ernst J,
Kharchenko PV,
Kheradpour P,
Negre N,
Eaton ML,
Landolin JM,
Bristow CA,
Ma LJ,
Lin MF,
Washietl S,
Arshinoff BI,
Ay F,
Meyer PE,
Robine N,
Washington NL,
Di Stefano L,
Berezikov E,
Brown CD,
Candeias R,
Carlson JW,
Carr A,
Jungreis I,
Marbach D,
Sealfon R,
Tolstorukov MY,
Will S,
Alekseyenko AA,
Artieri C,
Booth BW,
Brooks AN,
Dai Q,
Davis CA,
Duff MO,
Feng X,
Gorchakov AA,
Gu TT,
Henikoff JG,
Kapranov P,
Li RH,
MacAlpine HK,
Malone J,
Minoda A,
Nordman J,
Okamura K,
Perry M,
Powell SK,
Riddle NC,
Sakai A,
Samsonova A,
Sandler JE,
Schwartz YB,
Sher N,
Spokony R,
Sturgill D,
van Baren M,
Wan KH,
Yang L,
Yu C,
Feingold E,
Good P,
Guyer M,
Lowdon R,
Ahmad K,
Andrews J,
Berger B,
Brenner SE,
Brent MR,
Cherbas L,
Elgin SC,
Gingeras TR,
Grossman R,
Hoskins RA,
Kaufman TC,
Kent W,
Kuroda MI,
Orr-Weaver T,
Perrimon N,
Pirrotta V,
Posakony JW,
Ren B,
Russell S,
Cherbas P,
Graveley BR,
Lewis S,
Micklem G,
Oliver B,
Park PJ,
Celniker SE,
Henikoff S,
Karpen GH,
Lai EC,
MacAlpine DM,
Stein LD,
White KP,
Kellis M

Science
  330 (6012): 1787-1797; Dec 2010   PMC3192495
[Abstract]
[DOI] [Full Text] [PDF]

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Gerstein MB,
Lu ZJ,
Van Nostrand EL,
Cheng C,
Arshinoff BI,
Liu T,
Yip KY,
Robilotto R,
Rechtsteiner A,
Ikegami K,
Alves P,
Chateigner A,
Perry M,
Morris M,
Auerbach RK,
Feng X,
Leng J,
Vielle A,
Niu W,
Rhrissorrakrai K,
Agarwal A,
Alexander RP,
Barber G,
Brdlik CM,
Brennan J,
Brouillet JJ,
Carr A,
Cheung MS,
Clawson H,
Contrino S,
Dannenberg LO,
Dernburg AF,
Desai A,
Dick L,
Dose AC,
Du JA,
Egelhofer T,
Ercan S,
Euskirchen G,
Ewing B,
Feingold EA,
Gassmann R,
Good PJ,
Green P,
Gullier F,
Gutwein M,
Guyer MS,
Habegger L,
Han T,
Henikoff JG,
Henz SR,
Hinrichs A,
Holster H,
Hyman T,
Iniguez AL,
Janette J,
Jensen M,
Kato M,
Kent WJ,
Kephart E,
Khivansara V,
Khurana E,
Kim JK,
Kolasinska-Zwierz P,
Lai EC,
Latorre I,
Leahey A,
Lewis S,
Lloyd P,
Lochovsky L,
Lowdon RF,
Lubling Y,
Lyne R,
MacCoss M,
Mackowiak SD,
Mangone M,
McKay SJ,
Mecenas D,
Merrihew G,
Miller DM,
Muroyama A,
Murray JI,
Ooi SL,
Pham H,
Phippen T,
Preston EA,
Rajewsky N,
Ratsch G,
Rosenbaum H,
Rozowsky J,
Rutherford K,
Ruzanov P,
Sarov M,
Sasidharan R,
Sboner A,
Scheid P,
Segal E,
Shin HJ,
Shou C,
Slack FJ,
Slightam C,
Smith R,
Spencer WC,
Stinson EO,
Taing S,
Takasaki T,
Vafeados D,
Voronina K,
Wang GL,
Washington NL,
Whittle CM,
Wu BJ,
Yan KK,
Zeller G,
Zha Z,
Zhong M,
Zhou XL,
Ahringer J,
Strome S,
Gunsalus KC,
Micklem G,
Liu XS,
Reinke V,
Kim SK,
Hillier LW,
Henikoff S,
Piano F,
Snyder M,
Stein LD,
Lieb JD,
Waterston RH

Science
  330 (6012): 1775-1787; Dec 2010   PMC3142569
[Abstract]
[DOI] [Full Text] [PDF]

A Comprehensive Map of Insulator Elements for the Drosophila Genome
Negre N,
Brown CD,
Shah PK,
Kheradpour P,
Morrison CA,
Henikoff JG,
Feng X,
Ahmad K,
Russell S,
White RA,
Stein LD,
Henikoff S,
Kellis M,
White KP

Plos Genetics
  6 (1): Jan 2010   PMCID: PMC2797089
[Abstract]
[DOI] [Full Text]

A human functional protein interaction network and its application to cancer data analysis
Wu GM,
Feng X,
Stein LD

Genome Biology
  11 (5): 2010   PMCID: PMC2898064
[Abstract]
[DOI] [Full Text] [PDF]

Aberrant alternative splicing of thyroid hormone receptor in a TSH-secreting pituitary tumor is a mechanism for hormone resistance
Ando S,
Sarlis NJ,
Krishnan J,
Feng X,
Refetoff S,
Zhang MQ,
Oldfield EH,
Yen PM

Molecular Endocrinology
  15 (9): 1529-1538; Sep 2001  
[Abstract]
[Full Text] [PDF]


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