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11 Article(s) on File
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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
Delaneau O,
Marchini J,
McVeanh GA,
Donnelly P,
Lunter G,
Marchini JL,
Myers S,
Gupta-Hinch A,
Iqbal Z,
Mathieson I,
Rimmer A,
Xifara DK,
Kerasidou A,
Churchhouse C,
Altshuler DM,
Gabriel SB,
Lander ES,
Gupta N,
Daly MJ,
DePristo MA,
Banks E,
Bhatia G,
Carneiro MO,
Del Angel G,
Genovese G,
Handsaker RE,
Hartl C,
McCarroll SA,
Nemesh JC,
Poplin RE,
Schaffner SF,
Shakir K,
Sabeti PC,
Grossman SR,
Tabrizi S,
Tariyal R,
Li H,
Reich D,
Durbin RM,
Hurles ME,
Balasubramaniam S,
Burton J,
Danecek P,
Keane TM,
Kolb-Kokocinski A,
McCarthy S,
Stalker J,
Quail M,
Ayub Q,
Chen Y,
Coffey AJ,
Colonna V,
Huang N,
Jostins L,
Scally A,
Walter K,
Xue Y,
Zhang Y,
Blackburne B,
Lindsay SJ,
Ning Z,
Frankish A,
Harrow J,
Chris TS,
Abecasis GR,
Kang HM,
Anderson P,
Blackwell T,
Busonero F,
Fuchsberger C,
Jun G,
Maschio A,
Porcu E,
Sidore C,
Tan A,
Trost MK,
Bentley DR,
Grocock R,
Humphray S,
James T,
Kingsbury Z,
Bauer M,
Cheetham RK,
Cox T,
Eberle M,
Murray L,
Shaw R,
Chakravarti A,
Clark AG,
Keinan A,
Rodriguez-Flores JL,
De LaVega FM,
Degenhardt J,
Eichler EE,
Flicek P,
Clarke L,
Leinonen R,
Smith RE,
Zheng-Bradley X,
Beal K,
Cunningham F,
Herrero J,
McLaren WM,
Ritchie GR,
Barker J,
Kelman G,
Kulesha E,
Radhakrishnan R,
Roa A,
Smirnov D,
Streeter I,
Toneva I,
Gibbs RA,
Dinh H,
Kovar C,
Lee S,
Lewis L,
Muzny D,
Reid J,
Wang M,
Yu F,
Bainbridge M,
Challis D,
Evani US,
Lu J,
Nagaswamy U,
Sabo A,
Wang Y,
Yu J,
Fowler G,
Hale W,
Kalra D,
Green ED,
Knoppers BM,
Korbel JO,
Rausch T,
Sttz AM,
Lee C,
Griffin L,
Hsieh CH,
Mills RE,
Von Grotthuss M,
Zhang C,
Shi X,
Lehrach H,
Sudbrak R,
Amstislavskiy VS,
Lienhard M,
Mertes F,
Sultan M,
Timmermann B,
Yaspo ML,
Herwig SR,
Mardis ER,
Wilson RK,
Fulton L,
Fulton R,
Weinstock GM,
Chinwalla A,
Ding L,
Dooling D,
Koboldt DC,
McLellan MD,
Wallis JW,
Wendl MC,
Zhang Q,
Marth GT,
Garrison EP,
Kural D,
Lee WP,
Leong WF,
Ward AN,
Wu J,
Zhang M,
Nickerson DA,
Alkan C,
Hormozdiari F,
Ko A,
Sudmant PH,
Schmidt JP,
Davies CJ,
Gollub J,
Webster T,
Wong B,
Zhan Y,
Sherry ST,
Xiao C,
Church D,
Ananiev V,
Belaia Z,
Beloslyudtsev D,
Bouk N,
Chen C,
Cohen R,
Cook C,
Garner J,
Hefferon T,
Kimelman M,
Liu C,
Lopez J,
Meric P,
Ostapchuk Y,
Phan L,
Ponomarov S,
Schneider V,
Shekhtman E,
Sirotkin K,
Slotta D,
Zhang H,
Wang J,
Fang X,
Guo X,
Jian M,
Jiang H,
Jin X,
Li G,
Li J,
Li Y,
Liu X,
Lu Y,
Ma X,
Tai S,
Tang M,
Wang B,
Wang G,
Wu H,
Wu R,
Yin Y,
Zhang W,
Zhao J,
Zhao M,
Zheng X,
Lachlan H,
Fang L,
Li Q,
Li Z,
Lin H,
Liu B,
Luo R,
Shao H,
Xie Y,
Ye C,
Yu C,
Zheng H,
Zhu H,
Cai H,
Cao H,
Su Y,
Tian Z,
Yang H,
Yang L,
Zhu J,
Cai Z,
Albrecht MW,
Borodina TA,
Auton A,
Yoon SC,
Lihm J,
Makarov V,
Jin H,
Kim W,
Kim KC,
Gottipati S,
Jones D,
Cooper DN,
Ball EV,
Stenson PD,
Barnes B,
Kahn S,
Ye K,
Batzer MA,
Konkel MK,
Walker JA,
MacArthur DG,
Lek M,
Shriver MD,
Bustamante CD,
Gravel S,
Kenny EE,
Kidd JM,
Lacroute P,
Maples BK,
Moreno-Estrada A,
Zakharia F,
Henn B,
Sandoval K,
Byrnes JK,
Halperin E,
Baran Y,
Craig DW,
Christoforides A,
Izatt T,
Kurdoglu AA,
Sinari SA,
Homer N,
Squire K,
Sebat J,
Bafna V,
Burchard EG,
Hernandez RD,
Gignoux CR,
Haussler D,
Katzman SJ,
Kent WJ,
Howie B,
Ruiz-Linares A,
Dermitzakis ET,
Lappalainen T,
Devine SE,
Maroo A,
Tallon LJ,
Rosenfeld JA,
Michelson LP,
Angius A,
Cucca F,
Sanna S,
Bigham A,
Jones C,
Reinier F,
Lyons R,
Schlessinger D,
Awadalla P,
Hodgkinson A,
Oleksyk TK,
Martinez-Cruzado JC,
Fu Y,
Xiong M,
Jorde L,
Witherspoon D,
Xing J,
Browning BL,
Hajirasouliha I,
Chen K,
Albers CA,
Gerstein MB,
Abyzov A,
Chen J,
Habegger L,
Harmanci AO,
Mu XJ,
Sisu C,
Balasubramanian S,
Jin M,
Khurana E,
Clarke D,
Michaelson JJ,
Osullivan C,
Barnes KC,
Gharani N,
Toji LH,
Gerry N,
Kaye JS,
Kent A,
Mathias R,
Ossorio PN,
Parker M,
Rotimi CN,
Royal CD,
Tishkoff S,
Via M,
Bodmer W,
Bedoya G,
Yang G,
You CJ,
Garcia-Montero A,
Orfao A,
Dutil J,
Brooks LD,
Felsenfeld AL

Nature Communications
  5 (0): Jun 13 2014   Elsevier
[Abstract]
[DOI] [Full Text]

An integrated map of genetic variation from 1,092 human genomes
Altshuler DM,
Durbin RM,
Abecasis GR,
Bentley DR,
Chakravarti A,
Clark AG,
Donnelly P,
Eichler EE,
Flicek P,
Gabriel SB,
Gibbs RA,
Green ED,
Hurles ME,
Knoppers BM,
Korbel JO,
Lander ES,
Lee C,
Lehrach H,
Mardis ER,
Marth GT,
McVean GA,
Nickerson DA,
Schmidt JP,
Sherry ST,
Wang J,
Wilson RK,
Dinh H,
Kovar C,
Lee S,
Lewis L,
Muzny D,
Reid J,
Wang M,
Fang XD,
Guo XS,
Jian M,
Jiang H,
Jin X,
Li GQ,
Li JX,
Li YR,
Li Z,
Liu X,
Lu Y,
Ma XD,
Su Z,
Tai SS,
Tang MF,
Wang B,
Wang GB,
Wu HL,
Wu RH,
Yin Y,
Zhang WW,
Zhao J,
Zhao MR,
Zheng XL,
Zhou Y,
Gupta N,
Clarke L,
Leinonen R,
Smith RE,
Zheng-Bradley X,
Grocock R,
Humphray S,
James T,
Kingsbury Z,
Sudbrak R,
Albrecht MW,
Amstislavskiy VS,
Borodina TA,
Lienhard M,
Mertes F,
Sultan M,
Timmermann B,
Yaspo ML,
Fulton L,
Fulton R,
Weinstock GM,
Balasubramaniam S,
Burton J,
Danecek P,
Keane TM,
Kolb-Kokocinski A,
McCarthy S,
Stalker J,
Quail M,
Davies CJ,
Gollub J,
Webster T,
Wong B,
Zhan YP,
Auton A,
Yu F,
Bainbridge M,
Challis D,
Evani US,
Lu J,
Nagaswamy U,
Sabo A,
Wang Y,
Yu J,
Coin LJ,
Fang L,
Li QB,
Li ZY,
Lin HX,
Liu BH,
Luo RB,
Qin N,
Shao HJ,
Wang BQ,
Xie YL,
Ye C,
Yu C,
Zhang F,
Zheng HC,
Zhu HM,
Garrison EP,
Kural D,
Lee WP,
Leong WF,
Ward AN,
Wu JT,
Zhang MY,
Griffin L,
Hsieh CH,
Mills RE,
Shi XH,
von Grotthuss M,
Zhang CS,
Daly MJ,
DePristo MA,
Banks E,
Bhatia G,
Carneiro MO,
del Angel G,
Genovese G,
Handsaker RE,
Hartl C,
McCarroll SA,
Nemesh JC,
Poplin RE,
Schaffner SF,
Shakir K,
Yoon SC,
Lihm J,
Makarov V,
Jin HJ,
Kim W,
Kim KC,
Rausch T,
Beal K,
Cunningham F,
Herrero J,
McLaren WM,
Ritchie GR,
Gottipati S,
Keinan A,
Rodriguez-Flores JL,
Sabeti PC,
Grossman SR,
Tabrizi S,
Tariyal R,
Cooper DN,
Ball EV,
Stenson PD,
Barnes B,
Bauer M,
Cheetham RK,
Cox T,
Eberle M,
Kahn S,
Murray L,
Peden J,
Shaw R,
Ye K,
Batzer MA,
Konkel MK,
Walker JA,
MacArthur DG,
Lek M,
Herwig R,
Shriver MD,
Bustamante CD,
Byrnes JK,
De la Vega FM,
Gravel S,
Kenny EE,
Kidd JM,
Lacroute P,
Maples BK,
Moreno-Estrada A,
Zakharia F,
Halperin E,
Baran Y,
Craig DW,
Christoforides A,
Homer N,
Izatt T,
Kurdoglu AA,
Sinari SA,
Squire K,
Xiao CL,
Sebat J,
Bafna V,
Burchard EG,
Hernandez RD,
Gignoux CR,
Haussler D,
Katzman SJ,
Kent WJ,
Howie B,
Ruiz-Linares A,
Dermitzakis ET,
Lappalainen T,
Devine SE,
Liu XY,
Maroo A,
Tallon LJ,
Rosenfeld JA,
Michelson LP,
Kang HM,
Anderson P,
Angius A,
Bigham A,
Blackwell T,
Busonero F,
Cucca F,
Fuchsberger C,
Jones C,
Jun G,
Li Y,
Lyons R,
Maschio A,
Porcu E,
Reinier F,
Sanna S,
Schlessinger D,
Sidore C,
Tan A,
Trost MK,
Awadalla P,
Hodgkinson A,
Lunter G,
Marchini JL,
Myers S,
Churchhouse C,
Delaneau O,
Gupta-Hinch A,
Iqbal Z,
Mathieson I,
Rimmer A,
Xifara DK,
Oleksyk TK,
Fu YX,
Liu XM,
Xiong MM,
Jorde L,
Witherspoon D,
Xing JC,
Browning BL,
Alkan C,
Hajirasouliha I,
Hormozdiari F,
Ko A,
Sudmant PH,
Chen K,
Chinwalla A,
Ding L,
Dooling D,
Koboldt DC,
McLellan MD,
Wallis JW,
Wendl MC,
Zhang QY,
Tyler-Smith C,
Albers CA,
Ayub Q,
Chen Y,
Coffey AJ,
Colonna V,
Huang N,
Jostins L,
Li H,
Scally A,
Walter K,
Xue YL,
Zhang YJ,
Gerstein MB,
Abyzov A,
Balasubramanian S,
Chen JM,
Clarke D,
Fu Y,
Habegger L,
Harmanci AO,
Jin MK,
Khurana E,
Mu XJ,
Sisu C,
Degenhardt J,
Stutz AM,
Church D,
Michaelson JJ,
Ben B,
Lindsay SJ,
Ning ZM,
Yu FL,
Frankish A,
Harrow J,
Fowler G,
Hale W,
Kalra D,
Guo X,
Li G,
Zheng X,
Barker J,
Kelman G,
Kulesha E,
Radhakrishnan R,
Roa A,
Smirnov D,
Streeter I,
Toneva I,
Vaughan B,
Ananiev V,
Belaia Z,
Beloslyudtsev D,
Bouk N,
Chen C,
Cohen R,
Cook C,
Garner J,
Hefferon T,
Kimelman M,
Liu C,
Lopez J,
Meric P,
OSullivan C,
Ostapchuk Y,
Phan L,
Ponomarov S,
Schneider V,
Shekhtman E,
Sirotkin K,
Slotta D,
Zhang H,
Barnes KC,
Beiswanger C,
Cai HY,
Cao HZ,
Gharani N,
Henn B,
Jones D,
Kaye JS,
Kent A,
Kerasidou A,
Mathias R,
Ossorio PN,
Parker M,
Reich D,
Rotimi CN,
Royal CD,
Sandoval K,
Su YY,
Tian ZM,
Tishkoff S,
Toji LH,
Via M,
Wang YH,
Yang HM,
Yang L,
Zhu JY,
Bodmer W,
Bedoya G,
Ming CZ,
Yang G,
You CJ,
Peltonen L,
Garcia-Montero A,
Orfao A,
Dutil J,
Martinez-Cruzado JC,
Brooks LD,
Felsenfeld AL,
McEwen JE,
Clemm NC,
Duncanson A,
Dunn M,
Guyer MS,
Peterson JL,
Genomes Project C

Nature
  491 (7422): 56-65; Nov 1 2012  
[Abstract]
[DOI] [Full Text]

Assemblathon 1: A competitive assessment of de novo short read assembly methods
Earl D,
Bradnam K,
St. John J,
Darling A,
Lin D,
Fass J,
Yu HO,
Buffalo V,
Zerbino DR,
Diekhans M,
Nguyen N,
Ariyaratne PN,
Sung WK,
Ning Z,
Haimel M,
Simpson JT,
Fonseca NA,
Birol I,
Docking TR,
Ho IY,
Rokhsar DS,
Chikhi R,
Lavenier D,
Chapuis G,
Naquin D,
Maillet N,
Schatz MC,
Kelley DR,
Phillippy AM,
Koren S,
Yang SP,
Wu W,
Chou WC,
Srivastava A,
Shaw TI,
Ruby JG,
Skewes-Cox P,
Betegon M,
Dimon MT,
Solovyev V,
Seledtsov I,
Kosarev P,
Vorobyev D,
Ramirez-Gonzalez R,
Leggett R,
MacLean D,
Xia F,
Luo R,
Li Z,
Xie Y,
Liu B,
Gnerre S,
MacCallum I,
Przybylski D,
Ribeiro FJ,
Sharpe T,
Hall G,
Kersey PJ,
Durbin R,
Jackman SD,
Chapman JA,
Huang X,
DeRisi JL,
Caccamo M,
Li Y,
Jaffe DB,
Green RE,
Haussler D,
Korf I,
Paten B

Genome Research
  21 (12): 2224-2241; 2011  
[Abstract]
[DOI] [Full Text]

WormBase 2007
Rogers A,
Antoshechkin I,
Bieri T,
Blasiar D,
Bastiani C,
Canaran P,
Chan J,
Chen WJ,
Davis P,
Fernandes J,
Fiedler TJ,
Han M,
Harris T,
Kishore R,
Lee R,
McKay SJ,
Muller HM,
Nakamura C,
Ozersky P,
Petcherski A,
Schindelman G,
Schwarz EM,
Spooner W,
Tuli MA,
Auken KV,
Wang D,
Wang X,
Williams G,
Yook K,
Durbin R,
Stein LD,
Spieth J,
Sternberg PW

Nucl. Acids Res.
  36 (0): D612-7; Jan 2008   PMCID: PMC2238927
[Abstract]
[DOI] [Full Text] [PDF]

WormBase: new content and better access
Bieri T,
Blasiar D,
Ozersky P,
Antoshechkin I,
Bastiani C,
Canaran P,
Chan J,
Chen N,
Chen WJ,
Davis P,
Fiedler TJ,
Girard LR,
Han M,
Harris TW,
Kishore R,
Lee R,
McKay SJ,
Müller HM,
Nakamura C,
Petcherski A,
Rangarajan A,
Rogers A,
Schindelman G,
Schwarz EM,
Spooner W,
Tuli MA,
Van Auken K,
Wang D,
Wang X,
Williams G,
Durbin R,
Stein LD,
Sternberg PW,
Spieth J

Nucleic Acids Res
  35 (0): D506-D510; Jan 2007   PMCID: PMC1669750
[Abstract]
[DOI] [Full Text] [PDF]

The Sequence Ontology: a tool for the unification of genome annotations
Eilbeck K,
Lewis SE,
Mungall CJ,
Yandell M,
Stein L,
Durbin R,
Ashburner M

Genome Biology
  6 (5): 2005  
[Abstract]
[DOI] [Full Text]

WormBase: a multi-species resource for nematode biology and genomics
Harris TW,
Chen N,
Cunningham F,
Tello-Ruiz M,
Antoshechkin I,
Bastiani C,
Bieri T,
Blasiar D,
Bradnam K,
Chan J,
Chen CK,
Chen WJ,
Davis P,
Kenny E,
Kishore R,
Lawson D,
Lee R,
Muller HM,
Nakamura C,
Ozersky P,
Petcherski A,
Rogers A,
Sabo A,
Schwarz EM,
Van Auken K,
Wang Q,
Durbin R,
Spieth J,
Sternberg PW,
Stein LD

Nucleic Acids Res
  32 (0): D411-7; Jan 1 2004  
[Abstract]
[DOI]

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
Stein LD,
Bao Z,
Blasiar D,
Blumenthal T,
Brent MR,
Chen N,
Chinwalla A,
Clarke L,
Clee C,
Coghlan A,
Coulson A,
DEustachio P,
Fitch DH,
Fulton LA,
Fulton RE,
Griffiths-Jones S,
Harris TW,
Hillier LW,
Kamath R,
Kuwabara PE,
Mardis ER,
Marra MA,
Miner TL,
Minx P,
Mullikin JC,
Plumb RW,
Rogers J,
Schein JE,
Sohrmann M,
Spieth J,
Stajich JE,
Wei C,
Willey D,
Wilson RK,
Durbin R,
Waterston RH

PLoS Biol
  1 (2): E45; Nov 2003  
[Abstract]
[DOI] [Full Text]

WormBase: a cross-species database for comparative genomics
Harris TW,
Lee R,
Schwarz E,
Bradnam K,
Lawson D,
Chen W,
Blasier D,
Kenny E,
Cunningham F,
Kishore R,
Chan J,
Muller HM,
Petcherski A,
Thorisson G,
Day A,
Bieri T,
Rogers A,
Chen CK,
Spieth J,
Sternberg P,
Durbin R,
Stein LD

Nucleic Acids Research
  31 (1): 133-137; Jan 2003  
[Abstract]
[Full Text]

Initial sequencing and analysis of the human genome
Lander ES,
Linton LM,
Birren B,
Nusbaum C,
Zody MC,
Baldwin J,
Devon K,
Dewar K,
Doyle M,
FitzHugh W,
Funke R,
Gage D,
Harris K,
Heaford A,
Howland J,
Kann L,
Lehoczky J,
LeVine R,
McEwan P,
McKernan K,
Meldrim J,
Mesirov JP,
Miranda C,
Morris W,
Naylor J,
Raymond C,
Rosetti M,
Santos R,
Sheridan A,
Sougnez C,
Stange-Thomann N,
Stojanovic N,
Subramanian A,
Wyman D,
Rogers J,
Sulston J,
Ainscough R,
Beck S,
Bentley D,
Burton J,
Clee C,
Carter N,
Coulson A,
Deadman R,
Deloukas P,
Dunham A,
Dunham I,
Durbin R,
French L,
Grafham D,
Gregory S,
Hubbard T,
Humphray S,
Hunt A,
Jones M,
Lloyd C,
McMurray A,
Matthews L,
Mercer S,
Milne S,
Mullikin JC,
Mungall A,
Plumb R,
Ross M,
Shownkeen R,
Sims S,
Waterston RH,
Wilson RK,
Hillier LW,
McPherson JD,
Marra MA,
Mardis ER,
Fulton LA,
Chinwalla AT,
Pepin KH,
Gish WR,
Chissoe SL,
Wendl MC,
Delehaunty KD,
Miner TL,
Delehaunty A,
Kramer JB,
Cook LL,
Fulton RS,
Johnson DL,
Minx PJ,
Clifton SW,
Hawkins T,
Branscomb E,
Predki P,
Richardson P,
Wenning S,
Slezak T,
Doggett N,
Cheng JF,
Olsen A,
Lucas S,
Elkin C,
Uberbacher E,
Frazier M,
Gibbs RA,
Muzny DM,
Scherer SE,
Bouck JB,
Sodergren EJ,
Worley KC,
Rives CM,
Gorrell JH,
Metzker ML,
Naylor SL,
Kucherlapati RS,
Nelson DL,
Weinstock GM,
Sakaki Y,
Fujiyama A,
Hattori M,
Yada T,
Toyoda A,
Itoh T,
Kawagoe C,
Watanabe H,
Totoki Y,
Taylor T,
Weissenbach J,
Heilig R,
Saurin W,
Artiguenave F,
Brottier P,
Bruls T,
Pelletier E,
Robert C,
Wincker P,
Rosenthal A,
Platzer M,
Nyakatura G,
Taudien S,
Rump A,
Yang HM,
Yu J,
Wang J,
Huang GY,
Gu J,
Hood L,
Rowen L,
Madan A,
Qin SZ,
Davis RW,
Federspiel NA,
Abola AP,
Proctor MJ,
Myers RM,
Schmutz J,
Dickson M,
Grimwood J,
Cox DR,
Olson MV,
Kaul R,
Shimizu N,
Kawasaki K,
Minoshima S,
Evans GA,
Athanasiou M,
Schultz R,
Roe BA,
Chen F,
Pan HQ,
Ramser J,
Lehrach H,
Reinhardt R,
McCombie WR,
de la Bastide M,
Dedhia N,
Blocker H,
Hornischer K,
Nordsiek G,
Agarwala R,
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