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12 Article(s) on File
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The Reactome pathway knowledgebase
Croft D,
Mundo AF,
Haw R,
Milacic M,
Weiser J,
Wu G,
Caudy M,
Garapati P,
Gillespie M,
Kamdar MR,
Jassal B,
Jupe S,
Matthews L,
May B,
Palatnik S,
Rothfels K,
Shamovsky V,
Song H,
Williams M,
Birney E,
Hermjakob H,
Stein L,
DEustachio P

Nucleic Acids Research
  42 (0): D472-7; Jan 2014   NLM
[Abstract]
[DOI] [Full Text]

Gramene 2013: comparative plant genomics resources
Monaco MK,
Stein J,
Naithani S,
Wei S,
Dharmawardhana P,
Kumari S,
Amarasinghe V,
Youens-Clark K,
Thomason J,
Preece J,
Pasternak S,
Olson A,
Jiao Y,
Lu Z,
Bolser D,
Kerhornou A,
Staines D,
Walts B,
Wu G,
DEustachio P,
Haw R,
Croft D,
Kersey PJ,
Stein L,
Jaiswal P,
Ware D

Nucleic Acids Research
  42 (0): D1193-9; Jan 2014   NLM
[Abstract]
[DOI] [Full Text]

Reactome pathway analysis to enrich biological discovery in proteomics data sets
Haw R,
Hermjakob H,
DEustachio P,
Stein LD

Proteomics
  11 (18): 3598-3613; Sep 2011  
[Abstract]
[DOI]

The Reactome BioMart
Haw RA,
Croft D,
Yung CK,
Ndegwa N,
DEustachio P,
Hermjakob H,
Stein LD

Database : the journal of biological databases and curation
  2011 (0): 2011  
[Abstract]
[Full Text]

Reactome: A database of reactions, pathways and biological processes
Croft D,
OKelly G,
Wu G,
Haw R,
Gillespie M,
Matthews L,
Caudy M,
Garapati P,
Gopinath G,
Jassal B,
Jupe S,
Kalatskaya I,
MayMahajan S,
May B,
Ndegwa N,
Schmidt E,
Shamovsky V,
Yung C,
Birney E,
Hermjakob H,
DEustachio P,
Stein LD

Nucleic Acids Research
  39 (0): Jan 2011   ISI PMC3013646
[Abstract]
[DOI] [Full Text] [PDF]

The BioPAX community standard for pathway data sharing
Demir E,
Cary MP,
Paley S,
Fukuda K,
Lemer C,
Vastrik I,
Wu G,
DEustachio P,
Schaefer C,
Luciano J,
Schacherer F,
Martinez-Flores I,
Hu Z,
Jimenez-Jacinto V,
Joshi-Tope G,
Kandasamy K,
Lopez-Fuentes AC,
Mi H,
Pichler E,
Rodchenkov I,
Splendiani A,
Tkachev S,
Zucker J,
Gopinath G,
Rajasimha H,
Ramakrishnan R,
Shah I,
Syed M,
Anwar N,
Babur ,
Blinov M,
Brauner E,
Corwin D,
Donaldson S,
Gibbons F,
Goldberg R,
Hornbeck P,
Luna A,
Murray-Rust P,
Neumann E,
Reubenacker O,
Samwald M,
Van Iersel M,
Wimalaratne S,
Allen K,
Braun B,
Whirl-Carrillo M,
Cheung KH,
Dahlquist K,
Finney A,
Gillespie M,
Glass E,
Gong L,
Haw R,
Honig M,
Hubaut O,
Kane D,
Krupa S,
Kutmon M,
Leonard J,
Marks D,
Merberg D,
Petri V,
Pico A,
Ravenscroft D,
Ren L,
Shah N,
Sunshine M,
Tang R,
Whaley R,
Letovksy S,
Buetow KH,
Rzhetsky A,
Schachter V,
Sobral BS,
Dogrusoz U,
McWeeney S,
Aladjem M,
Birney E,
Collado-Vides J,
Goto S,
Hucka M,
Novère NL,
Maltsev N,
Pandey A,
Thomas P,
Wingender E,
Karp PD,
Sander C,
Bader GD

Nature Biotechnology
  28 (9): 935-942; 2010   PMCID: PMC3001121
[Abstract]
[DOI] [Full Text] [PDF]

Reactome knowledgebase of human biological pathways and processes
Matthews L,
Gopinath G,
Gillespie M,
Caudy M,
Croft D,
de Bono B,
Garapati P,
Hemish J,
Hermjakob H,
Jassal B,
Kanapin A,
Lewis S,
Mahajan S,
May B,
Schmidt E,
Vastrik I,
Wu G,
Birney E,
Stein LD,
DEustachio P

Nucleic Acids Res
  37 (0): D619-22; Jan 2009   PMCID: PMC2686536
[Abstract]
[DOI] [Full Text] [PDF]

Arabidopsis Reactome: A Foundation Knowledgebase for Plant Systems Biology
Tsesmetzis N,
Couchman M,
Higgins J,
Smith A,
Doonan JH,
Seifert GJ,
Schmidt EE,
Vastrik I,
Birney E,
Wu G,
DEustachio P,
Stein LD,
Morris RJ,
Bevan MW,
Walsh SV

Plant Cell
  20 (6): 1426-36; Jun 2008   PMCID: PMC2483364
[DOI] [Full Text] [PDF]

Reactome: a knowledge base of biologic pathways and processes
Vastrik I,
DEustachio P,
Schmidt E,
Joshi-Tope G,
Gopinath G,
Croft D,
de Bono B,
Gillespie M,
Jassal B,
Lewis S,
Matthews L,
Wu G,
Birney E,
Stein LD

Genome Biol
  8 (3): R39; 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Reactome: a knowledgebase of biological pathways
Joshi-Tope G,
Gillespie M,
Vastrik I,
DEustachio P,
Schmidt E,
de Bono B,
Jassal B,
Gopinath GR,
Wu GR,
Matthews L,
Lewis S,
Birney E,
Stein LD

Nucleic Acids Res
  33 (0): D428-32; Jan 1 2005  
[Abstract]
[DOI] [Full Text]

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
Stein LD,
Bao Z,
Blasiar D,
Blumenthal T,
Brent MR,
Chen N,
Chinwalla A,
Clarke L,
Clee C,
Coghlan A,
Coulson A,
DEustachio P,
Fitch DH,
Fulton LA,
Fulton RE,
Griffiths-Jones S,
Harris TW,
Hillier LW,
Kamath R,
Kuwabara PE,
Mardis ER,
Marra MA,
Miner TL,
Minx P,
Mullikin JC,
Plumb RW,
Rogers J,
Schein JE,
Sohrmann M,
Spieth J,
Stajich JE,
Wei C,
Willey D,
Wilson RK,
Durbin R,
Waterston RH

PLoS Biol
  1 (2): E45; Nov 2003  
[Abstract]
[DOI] [Full Text]

The genome knowledgebase: A resource for biologists and bioinformaticists
Joshi-Tope G,
Vastrik I,
Gopinath GR,
Matthews L,
Schmidt E,
Gillespie M,
DEustachio P,
Jassal B,
Lewis S,
Wu G,
Birney E,
Stein L

Cold Spring Harbor Symposia on Quantitative Biology LXVIII: The genome of Homo Sapiens
  68 237-243; 2003  
[DOI]


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