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6 Article(s) on File
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Comparative analysis of the transcriptome across distant species
Gerstein MB,
Rozowsky J,
Yan KK,
Wang D,
Cheng C,
Brown JB,
Davis CA,
Hillier L,
Sisu C,
Li JJ,
Pei B,
Harmanci AO,
Duff MO,
Djebali S,
Alexander RP,
Alver BH,
Auerbach R,
Bell K,
Bickel PJ,
Boeck ME,
Boley NP,
Booth BW,
Cherbas L,
Cherbas P,
Di C,
Dobin A,
Drenkow J,
Ewing B,
Fang G,
Fastuca M,
Feingold EA,
Frankish A,
Gao G,
Good PJ,
Guigo R,
Hammonds A,
Harrow J,
Hoskins RA,
Howald C,
Hu L,
Huang H,
Hubbard TJ,
Huynh C,
Jha S,
Kasper D,
Kato M,
Kaufman TC,
Kitchen RR,
Ladewig E,
Lagarde J,
Lai E,
Leng J,
Lu Z,
MacCoss M,
May G,
McWhirter R,
Merrihew G,
Miller DM,
Mortazavi A,
Murad R,
Oliver B,
Olson S,
Park PJ,
Pazin MJ,
Perrimon N,
Pervouchine D,
Reinke V,
Reymond A,
Robinson G,
Samsonova A,
Saunders GI,
Schlesinger F,
Sethi A,
Slack FJ,
Spencer WC,
Stoiber MH,
Strasbourger P,
Tanzer A,
Thompson OA,
Wan KH,
Wang G,
Wang H,
Watkins KL,
Wen J,
Wen K,
Xue C,
Yang L,
Yip K,
Zaleski C,
Zhang Y,
Zheng H,
Brenner SE,
Graveley BR,
Celniker SE,
Gingeras TR,
Waterston R

Nature
  512 (7515): 445-8; Aug 28 2014   Nlm
[Abstract]
[DOI] [Full Text]

The developmental transcriptome of Drosophila melanogaster
Graveley BR,
Brooks AN,
Carlson J,
Duff MO,
Landolin JM,
Yang L,
Artieri CG,
van Baren MJ,
Boley N,
Booth BW,
Brown JB,
Cherbas L,
Davis CA,
Dobin A,
Li RH,
Lin W,
Malone JH,
Mattiuzzo NR,
Miller D,
Sturgill D,
Tuch BB,
Zaleski C,
Zhang DY,
Blanchette M,
Dudoit S,
Eads B,
Green RE,
Hammonds A,
Jiang LC,
Kapranov P,
Langton L,
Perrimon N,
Sandler JE,
Wan KH,
Willingham A,
Zhang Y,
Zou Y,
Andrews J,
Bickel PJ,
Brenner SE,
Brent MR,
Cherbas P,
Gingeras TR,
Hoskins RA,
Kaufman TC,
Oliver B,
Celniker SE

Nature
  471 (7339): 473-479; Mar 2011   ISI PMC3075879
[Abstract]
[DOI]

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Roy S,
Ernst J,
Kharchenko PV,
Kheradpour P,
Negre N,
Eaton ML,
Landolin JM,
Bristow CA,
Ma LJ,
Lin MF,
Washietl S,
Arshinoff BI,
Ay F,
Meyer PE,
Robine N,
Washington NL,
Di Stefano L,
Berezikov E,
Brown CD,
Candeias R,
Carlson JW,
Carr A,
Jungreis I,
Marbach D,
Sealfon R,
Tolstorukov MY,
Will S,
Alekseyenko AA,
Artieri C,
Booth BW,
Brooks AN,
Dai Q,
Davis CA,
Duff MO,
Feng X,
Gorchakov AA,
Gu TT,
Henikoff JG,
Kapranov P,
Li RH,
MacAlpine HK,
Malone J,
Minoda A,
Nordman J,
Okamura K,
Perry M,
Powell SK,
Riddle NC,
Sakai A,
Samsonova A,
Sandler JE,
Schwartz YB,
Sher N,
Spokony R,
Sturgill D,
van Baren M,
Wan KH,
Yang L,
Yu C,
Feingold E,
Good P,
Guyer M,
Lowdon R,
Ahmad K,
Andrews J,
Berger B,
Brenner SE,
Brent MR,
Cherbas L,
Elgin SC,
Gingeras TR,
Grossman R,
Hoskins RA,
Kaufman TC,
Kent W,
Kuroda MI,
Orr-Weaver T,
Perrimon N,
Pirrotta V,
Posakony JW,
Ren B,
Russell S,
Cherbas P,
Graveley BR,
Lewis S,
Micklem G,
Oliver B,
Park PJ,
Celniker SE,
Henikoff S,
Karpen GH,
Lai EC,
MacAlpine DM,
Stein LD,
White KP,
Kellis M

Science
  330 (6012): 1787-1797; Dec 2010   PMC3192495
[Abstract]
[DOI] [Full Text] [PDF]

The future of psychiatric research: Genomes and neural circuits
Akil H,
Brenner S,
Kandel E,
Kendler KS,
King MC,
Scolnick E,
Watson JD,
Zoghbi HY

Science
  327 (5973): 1580-1581; Mar 26 2010   PMC3091000
[Abstract]
[DOI] [Full Text] [PDF]

The transcriptional landscape of the mammalian genome
Carninci P,
Kasukawa T,
Katayama S,
Gough J,
Frith MC,
Maeda N,
Oyama R,
Ravasi T,
Lenhard B,
Wells C,
Kodzius R,
Shimokawa K,
Bajic VB,
Brenner SE,
Batalov S,
Forrest AR,
Zavolan M,
Davis MJ,
Wilming LG,
Aidinis V,
Allen JE,
Ambesi-Impiombato A,
Apweiler R,
Aturaliya RN,
Bailey TL,
Bansal M,
Baxter L,
Beisel KW,
Bersano T,
Bono H,
Chalk AM,
Chiu KP,
Choudhary V,
Christoffels A,
Clutterbuck DR,
Crowe ML,
Dalla E,
Dalrymple BP,
de Bono B,
della Gatta G,
di Bernardo D,
Down T,
Engstrom P,
Fagiolini M,
Faulkner G,
Fletcher CF,
Fukushima T,
Furuno M,
Futaki S,
Gariboldi M,
Georgii-Hemming P,
Gingeras TR,
Gojobori T,
Green RE,
Gustincich S,
Harbers M,
Hayashi Y,
Hensch TK,
Hirokawa N,
Hill D,
Huminiecki L,
Iacono M,
Ikeo K,
Iwama A,
Ishikawa T,
Jakt M,
Kanapin A,
Katoh M,
Kawasawa Y,
Kelso J,
Kitamura H,
Kitano H,
Kollias G,
Krishnan SP,
Kruger AF,
Kummerfeld SK,
Kurochkin IV,
Lareau LF,
Lazarevic D,
Lipovich L,
Liu J,
Liuni S,
McWilliam S,
Madan Babu M,
Madera M,
Marchionni L,
Matsuda H,
Matsuzawa S,
Miki H,
Mignone F,
Miyake S,
Morris K,
Mottagui-Tabar S,
Mulder N,
Nakano N,
Nakauchi H,
Ng P,
Nilsson R,
Nishiguchi S,
Nishikawa S,
Nori F,
Ohara O,
Okazaki Y,
Orlando V,
Pang KC,
Pavan WJ,
Pavesi G,
Pesole G,
Petrovsky N,
Piazza S,
Reed J,
Reid JF,
Ring BZ,
Ringwald M,
Rost B,
Ruan Y,
Salzberg SL,
Sandelin A,
Schneider C,
Schönbach C,
Sekiguchi K,
Semple CA,
Seno S,
Sessa L,
Sheng Y,
Shibata Y,
Shimada H,
Shimada K,
Silva D,
Sinclair B,
Sperling S,
Stupka E,
Sugiura K,
Sultana R,
Takenaka Y,
Taki K,
Tammoja K,
Tan SL,
Tang S,
Taylor MS,
Tegner J,
Teichmann SA,
Ueda HR,
van Nimwegene E,
Verardo R,
Wei CL,
Yagi K,
Yamanishi H,
Zabarovsky E,
Zhu S,
Zimmer A,
Hide W,
Bult C,
Grimmond SM,
Teasdale RD,
Liu ET,
Brusic V,
Quackenbush J,
Wahlestedt C,
Mattick JS,
Hume DA,
Kai C,
Sasaki D,
Tomaru Y,
Fukuda S,
Kanamori-Katayama M,
Suzuki M,
Aoki J,
Arakawa T,
Iida J,
Imamura K,
Itoh M,
Kato T,
Kawaji H,
Kawagashira N,
Kawashima T,
Kojima M,
Kondo S,
Konno H,
Nakano K,
Ninomiya N,
Nishio T,
Okada M,
Plessy C,
Shibata K,
Shiraki T,
Suzuki S,
Tagami M,
Waki K,
Watahiki A,
Okamura-Oho Y,
Suzuki H,
Kawai J,
Hayashizaki Y

Science
  309 (5740): 1559-1563; 2005  
[Abstract]
[Full Text]

The Bioperl toolkit: Perl modules for the life sciences
Stajich JE,
Block D,
Boulez K,
Brenner SE,
Chervitz SA,
Dagdigian C,
Fuellen G,
Gilbert JG,
Korf I,
Lapp H,
Lehvaslaiho H,
Matsalla C,
Mungall CJ,
Osborne BI,
Pocock MR,
Schattner P,
Senger M,
Stein LD,
Stupka E,
Wilkinson MD,
Birney E

Genome Res
  12 (10): 1611-8; Oct 2002  
[Abstract]
[Full Text]


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