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16 Article(s) on File
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A comparative encyclopedia of DNA elements in the mouse genome
Yue F,
Cheng Y,
Breschi A,
Vierstra J,
Wu W,
Ryba T,
Sandstrom R,
Ma Z,
Davis C,
Pope BD,
Shen Y,
Pervouchine DD,
Djebali S,
Thurman RE,
Kaul R,
Rynes E,
Kirilusha A,
Marinov GK,
Williams BA,
Trout D,
Amrhein H,
Fisher-Aylor K,
Antoshechkin I,
DeSalvo G,
See LH,
Fastuca M,
Drenkow J,
Zaleski C,
Dobin A,
Prieto P,
Lagarde J,
Bussotti G,
Tanzer A,
Denas O,
Li K,
Bender MA,
Zhang M,
Byron R,
Groudine MT,
McCleary D,
Pham L,
Ye Z,
Kuan S,
Edsall L,
Wu YC,
Rasmussen MD,
Bansal MS,
Kellis M,
Keller CA,
Morrissey CS,
Mishra T,
Jain D,
Dogan N,
Harris RS,
Cayting P,
Kawli T,
Boyle AP,
Euskirchen G,
Kundaje A,
Lin S,
Lin Y,
Jansen C,
Malladi VS,
Cline MS,
Erickson DT,
Kirkup VM,
Learned K,
Sloan CA,
Rosenbloom KR,
Lacerda de Sousa B,
Beal K,
Pignatelli M,
Flicek P,
Lian J,
Kahveci T,
Lee D,
Kent WJ,
Ramalho Santos M,
Herrero J,
Notredame C,
Johnson A,
Vong S,
Lee K,
Bates D,
Neri F,
Diegel M,
Canfield T,
Sabo PJ,
Wilken MS,
Reh TA,
Giste E,
Shafer A,
Kutyavin T,
Haugen E,
Dunn D,
Reynolds AP,
Neph S,
Humbert R,
Hansen RS,
De Bruijn M,
Selleri L,
Rudensky A,
Josefowicz S,
Samstein R,
Eichler EE,
Orkin SH,
Levasseur D,
Papayannopoulou T,
Chang KH,
Skoultchi A,
Gosh S,
Disteche C,
Treuting P,
Wang Y,
Weiss MJ,
Blobel GA,
Cao X,
Zhong S,
Wang T,
Good PJ,
Lowdon RF,
Adams LB,
Zhou XQ,
Pazin MJ,
Feingold EA,
Wold B,
Taylor J,
Mortazavi A,
Weissman SM,
Stamatoyannopoulos JA,
Snyder MP,
Guigo R,
Gingeras TR,
Gilbert DM,
Hardison RC,
Beer MA,
Ren B

Nature
  515 (7527): 355-64; Nov 20 2014   Nlm
[Abstract]
[DOI] [Full Text]

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation
Shi J,
Whyte WA,
Zepeda-Mendoza CJ,
Milazzo JP,
Shen C,
Roe JS,
Minder JL,
Mercan F,
Wang E,
Eckersley-Maslin MA,
Campbell AE,
Kawaoka S,
Shareef S,
Zhu Z,
Kendall J,
Muhar M,
Haslinger C,
Yu M,
Roeder RG,
Wigler MA,
Blobel GA,
Zuber J,
Spector DL,
Young RA,
Vakoc CR

Genes Dev
  27 (24): 264-273 ; Nov 27 2013   NLM
[Abstract]
[DOI] [Full Text]

An encyclopedia of mouse DNA elements (Mouse ENCODE)
Stamatoyannopoulos JA,
Snyder M,
Hardison R,
Ren B,
Gingeras T,
Gilbert DM,
Groudine M,
Bender M,
Kaul R,
Canfield T,
Giste E,
Johnson A,
Zhang M,
Balasundaram G,
Byron R,
Roach V,
Sabo PJ,
Sandstrom R,
Stehling AS,
Thurman RE,
Weissman SM,
Cayting P,
Hariharan M,
Lian J,
Cheng Y,
Landt SG,
Ma ZH,
Wold BJ,
Dekker J,
Crawford GE,
Keller CA,
Wu WS,
Morrissey C,
Kumar SA,
Mishra T,
Jain D,
Byrska-Bishop M,
Blankenberg D,
Lajoie BR,
Jain G,
Sanyal A,
Chen KB,
Denas O,
Taylor J,
Blobel GA,
Weiss MJ,
Pimkin M,
Deng WL,
Marinov GK,
Williams BA,
Fisher-Aylor KI,
Desalvo G,
Kiralusha A,
Trout D,
Amrhein H,
Mortazavi A,
Edsall L,
McCleary D,
Kuan S,
Shen Y,
Yue F,
Ye Z,
Davis CA,
Zaleski C,
Jha S,
Xue CH,
Dobin A,
Lin W,
Fastuca M,
Wang HI,
Guigo R,
Djebali S,
Lagarde J,
Ryba T,
Sasaki T,
Malladi VS,
Cline MS,
Kirkup VM,
Learned K,
Rosenbloom KR,
Kent WJ,
Feingold EA,
Good PJ,
Pazin M,
Lowdon RF,
Adams LB,
Mouse EC

Genome Biology
  13 (8): Aug 13 2012  
[Abstract]
[DOI] [Full Text]

A Reconfigured Pattern of MLL Occupancy within Mitotic Chromatin Promotes Rapid Transcriptional Reactivation Following Mitotic Exit
Blobel GA,
Kadauke S,
Wang E,
Lau AW,
Zuber J,
Chou MM,
Vakoc CR

Molecular Cell
  36 (6): 970-983; Dec 24 2009   PMC2818742
[Abstract]
[DOI] [Full Text]

Graded repression of PU.1/Sfpi1 gene transcription by GATA factors regulates hematopoietic cell fate
Chou ST,
Khandros E,
Bailey LC,
Nichols KE,
Vakoc CR,
Yao Y,
Huang ZJ,
Crispino JD,
Hardison RC,
Blobel GA,
Weiss MJ

Blood
  114 (5): 983-994; Jul 30 2009   PMC2721792
[Abstract]
[DOI] [Full Text] [PDF]

Low frequency of MLL3 mutations in colorectal carcinoma
Vakoc CR,
Blobel GA,
Wen Y,
Gibbs RA,
Johnstone CN,
Rustgi AK

Cancer Genetics and Cytogenetics
  189 (2): 140-141; Mar 2009  
[DOI] [Full Text] [PDF]

SCL and associated proteins distinguish active from repressive GATA transcription factor complexes
Tripic T,
Deng W,
Cheng Y,
Zhang Y,
Vakoc CR,
Gregory GD,
Hardison RC,
Blobel GA

Blood
  113 (10): 2191-2201; 2009  
[Abstract]
[DOI] [Full Text]

DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells
Steger DJ,
Lefterova MI,
Ying L,
Stonestrom AJ,
Schupp M,
Zhuo D,
Vakoc AL,
Kim JE,
Chen J,
Lazar MA,
Blobel GA,
Vakoc CR

Molecular and Cellular Biology
  28 (8): 2825-2839; 2008  
[Abstract]
[DOI] [Full Text]

Exchange of GATA Factors Mediates Transitions in Looped Chromatin Organization at a Developmentally Regulated Gene Locus
Jing H,
Vakoc CR,
Ying L,
Mandat S,
Wang H,
Zheng X,
Blobel GA

Molecular Cell
  29 (2): 232-242; 2008  
[Abstract]
[DOI] [Full Text]

Mammalian ASH1L is a histone methyltransferase that occupies the transcribed region of active genes
Gregory GD,
Vakoc CR,
Rozovskaia T,
Zheng X,
Patel S,
Nakamura T,
Canaani E,
Blobel GA

Molecular and Cellular Biology
  27 (24): 8466-8479; 2007  
[Abstract]
[DOI] [Full Text]

Acetylation of GATA-1 is required for chromatin occupancy
Lamonica JM,
Vakoc CR,
Blobel GA

Blood
  108 (12): 3736-3738; 2006  
[Abstract]
[DOI] [Full Text]

In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation
Zeng PY,
Vakoc CR,
Chen ZC,
Blobel GA,
Berger SL

Biotechniques
  41 (6): 694-698; 2006  
[DOI] [Full Text]

FOG-1 recruits the NuRD repressor complex to mediate transcriptional repression by GATA-1
Hong W,
Nakazawa M,
Chen YY,
Kori R,
Vakoc CR,
Rakowski C,
Blobel GA

Embo Journal
  24 (13): 2367-2378; 2005  
[Abstract]
[DOI] [Full Text]

Histone H3 lysine 9 methylation and HP1γ are associated with transcription elongation through mammalian chromatin
Vakoc CR,
Mandat SA,
Olenchock BA,
Blobel GA

Molecular Cell
  19 (3): 381-391; 2005  
[Abstract]
[DOI] [Full Text]

Proximity among distant regulatory elements at the beta globin locus requires GATA-1 and FOG-1
Vakoc CR,
Letting DL,
Gheldof N,
Sawado T,
Bender MA,
Groudine M,
Weiss MJ,
Dekker J,
Blobel GA

Molecular Cell
  17 (3): 453-462; 2005  
[Abstract]
[DOI] [Full Text]

Global regulation of erythroid gene expression by transcription factor GATA-1
Welch JJ,
Watts JA,
Vakoc CR,
Yao Y,
Wang H,
Hardison RC,
Blobel GA,
Chodosh LA,
Weiss MJ

Blood
  104 (10): 3136-3147; 2004  
[Abstract]
[DOI] [Full Text]


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