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11 Article(s) on File
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Assessment of transcript reconstruction methods for RNA-seq
Steijger T,
Abril JF,
Engström PG,
Kokocinski F,
Akerman M,
Alioto T,
Ambrosini G,
Antonarakis SE,
Behr J,
Bertone P,
Bohnert R,
Bucher P,
Cloonan N,
Derrien T,
Djebali S,
Du J,
Dudoit S,
Gerstein M,
Gingeras TR,
Gonzalez D,
Grimmond SM,
Guigó R,
Habegger L,
Harrow J,
Hubbard TJ,
Iseli C,
Jean G,
Kahles A,
Lagarde J,
Leng J,
Lefebvre G,
Lewis S,
Mortazavi A,
Niermann P,
Rätsch G,
Reymond A,
Ribeca P,
Richard H,
Rougemont J,
Rozowsky J,
Sammeth M,
Sboner A,
Schulz MH,
Searle SM,
Solorzano ND,
Solovyev V,
Stanke M,
Stevenson BJ,
Stockinger H,
Valsesia A,
Weese D,
White S,
Wold BJ,
Wu J,
Wu TD,
Zeller G,
Zerbino D,
Zhang MQ

Nature Methods
  10 (12): 1177-1184; Nov 2013  
[Abstract]
[DOI] [Full Text]

Splicing-Factor Oncoprotein SRSF1 Stabilizes p53 via RPL5 and Induces Cellular Senescence
Fregoso OI,
Das S,
Akerman M,
Krainer AR

Molecular Cell
  50 (1): 56-66; Apr 11 2013   TR
[Abstract]
[DOI] [Full Text]

Widespread recognition of 5 splice sites by noncanonical base-pairing to U1 snRNA involving bulged nucleotides
Roca X,
Akerman M,
Gaus H,
Berdeja A,
Bennett CF,
Krainer AR

Genes Development
  26 (10): 1098-109; May 15 2012   Nlm
[Abstract]
[DOI] [Full Text]

Exon-centric regulation of pyruvate kinase M alternative splicing via mutually exclusive exons
Wang ZX,
Chatterjee D,
Jeon HY,
Akerman M,
Vander Heiden MG,
Cantley LC,
Krainer AR

Journal of Molecular Cell Biology
  4 (2): 79-87; Apr 2012  
[Abstract]
[DOI] [Full Text]

Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains
Sela H,
Spiridon LN,
Petrescu AJ,
Akerman M,
Mandel-Gutfreund Y,
Nevo E,
Loutre C,
Keller B,
Schulman AH,
Fahima T

Molecular Plant Pathology
  13 (3): 276-287; Apr 2012  
[Abstract]
[DOI] [Full Text]

Oncogenic Splicing Factor SRSF1 Is a Critical Transcriptional Target of MYC
Das S,
Anczuków O,
Akerman M,
Krainer A

Cell Reports
  1 (2): 110-117; Feb 23 2012  
[Abstract]
[DOI] [Full Text]

The splicing factor SRSF1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation
Anczukow O,
Rosenberg AZ,
Akerman M,
Das S,
Zhan L,
Karni R,
Muthuswamy SK,
Krainer AR

Nat Struct Mol Biol
  19 (2): 220-228; Jan 15 2012   NLM
[Abstract]
[DOI] [Full Text]

SpliceTrap: a method to quantify alternative splicing under single cellular conditions
Wu J,
Akerman M,
Sun S,
McCombie WR,
Krainer AR,
Zhang MQ

Bioinformatics
  27 (21): 3010-3016 ; Nov 2011   PMC3198574
[Abstract]
[DOI]

Ancient diversity of splicing motifs and protein surfaces in the wild emmer wheat (Triticum dicoccoides) LR10 coiled coil (CC) and leucine-rich repeat (LRR) domains
Sela H,
Spiridon LN,
Petrescu AJ,
Akerman M,
Mandel-Gutfreund Y,
Nevo E,
Loutre C,
Keller B,
Schulman AH,
Fahima T

Mol Plant Pathol
  (0): Sep 23 2011   NLM
[Abstract]
[DOI] [Full Text]

Alternative splicing of SLC39A14 in colorectal cancer is regulated by the Wnt pathway
Thorsen K,
Mansilla F,
Schepeler T,
OSTER B,
Rasmussen MH,
DYRSKJOT L,
Karni R,
Akerman M,
Krainer AR,
Laurberg S,
Andersen CL,
ORNTOFT TF

Molecular and Cellular Proteomics
  10 (1): Jan 1 2011   PMC3013455
[Abstract]
[DOI]

SFmap: a web server for motif analysis and prediction of splicing factor binding sites
Paz I,
Akerman M,
Dror I,
Kosti I,
Mandel-Gutfreund Y

Nucleic Acids Res
  (0): May 25 2010   PMCID: PMC2896136
[Abstract]
[DOI] [Full Text] [PDF]


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