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32 Article(s) on File
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Clustering autism: using neuroanatomical differences in 26 mouse models to gain insight into the heterogeneity
Ellegood J,
Anagnostou E,
Babineau BA,
Crawley JN,
Lin L,
Genestine M,
DiCicco-Bloom E,
Lai JK,
Foster JA,
Penagarikano O,
Geschwind DH,
Pacey LK,
Hampson DR,
Laliberte CL,
Mills AA,
Tam E,
Osborne LR,
Kouser M,
Espinosa-Becerra F,
Xuan Z,
Powell CM,
Raznahan A,
Robins DM,
Nakai N,
Nakatani J,
Takumi T,
van Eede MC,
Kerr TM,
Muller C,
Blakely RD,
Veenstra-VanderWeele J,
Henkelman RM,
Lerch JP

Mol Psychiatry
  (0): Sep 9 2014   Nlm
[Abstract]
[DOI] [Full Text]

Efficient transformation and artificial miRNA gene silencing in Lemna minor
Canto-Pastor A,
Molla-Morales A,
Ernst E,
Dahl W,
Zhai J,
Yan Y,
Meyers BC,
Shanklin J,
Martienssen R

Plant Biol (Stuttg)
  (0): Jul 2 2014   Nlm
[Abstract]
[DOI] [Full Text]

A promoter-level mammalian expression atlas
Forest AR,
Kawaji H,
Rehli M,
Baillie JK,
De Hoon MJ,
Haberle V,
Lassmann T,
Kulakovskiy IV,
Lizio M,
Itoh M,
Andersson R,
Mungall CJ,
Meehan TF,
Schmeier S,
Bertin N,
Jørgensen M,
Dimont E,
Arner E,
Schmidl C,
Schaefer U,
Medvedeva YA,
Plessy C,
Vitezic M,
Severin J,
Semple CA,
Ishizu Y,
Young RS,
Francescatto M,
Altschuler IA,
Albanese D,
Altschule GM,
Arakawa T,
Archer JA,
Arner P,
Babina M,
Rennie S,
Balwierz PJ,
Beckhouse AG,
Pradhan-Bhatt S,
Blake JA,
Blumenthal A,
Bodega B,
Bonetti A,
Briggs J,
Brombacher F,
Burroughs AM,
Califano A,
Cannistraci CV,
Carbajo D,
Chen Y,
Chierici M,
Ciani Y,
Clevers HC,
Dalla E,
Davis CA,
Detmar M,
Diehl AD,
Dohi T,
Drabløs F,
Edge AS,
Edinger M,
Ekwall K,
Endoh M,
Enomoto H,
Fagiolini M,
Fairbairn L,
Fang H,
Farach-Carson MC,
Faulkner GJ,
Favorov AV,
Fisher ME,
Frith MC,
Fujita R,
Fukuda S,
Furlanello C,
Furuno M,
Furusawa JI,
Geijtenbeek TB,
Gibson AP,
Gingeras T,
Goldowitz D,
Gough J,
Guhl S,
Guler R,
Gustincich S,
Ha TJ,
Hamaguchi M,
Hara M,
Harbers M,
Harshbarger J,
Hasegawa A,
Hasegawa Y,
Hashimoto T,
Herlyn M,
Hitchens KJ,
Sui SJ,
Hofmann OM,
Hoof I,
Hori F,
Huminiecki L,
Iida K,
Ikawa T,
Jankovic BR,
Jia H,
Joshi A,
Jurman G,
Kaczkowski B,
Kai C,
Kaida K,
Kaiho A,
Kajiyama K,
Kanamori-Katayama M,
Kasianov AS,
Kasukawa T,
Katayama S,
Kato S,
Kawaguchi S,
Kawamoto H,
Kawamura YI,
Kawashima T,
Kempfle JS,
Kenna TJ,
Kere J,
Khachigian LM,
Kitamura T,
Klinken SP,
Knox AJ,
Kojima M,
Kojima S,
Kondo N,
Koseki H,
Koyasu S,
Krampitz S,
Kubosaki A,
Kwon AT,
Laros JF,
Lee W,
Lennartsson A,
Li K,
Lilje B,
Lipovich L,
Mackay-sim A,
Manabe RI,
Mar JC,
Marchand B,
Mathelier A,
Mejhert N,
Meynert A,
Mizuno Y,
De Morais DA,
Morikawa H,
Morimoto M,
Moro K,
Motakis E,
Motohashi H,
Mummery CL,
Murata M,
Nagao-Sato S,
Nakachi Y,
Nakahara F,
Nakamura T,
Nakamura Y,
Nakazato K,
Van Nimwegen E,
Ninomiya N,
Nishiyori H,
Noma S,
Nozaki T,
Ogishima S,
Ohkura N,
Ohmiya H,
Ohno H,
Ohshima M,
Okada-Hatakeyama M,
Okazaki Y,
Orlando V,
Ovchinnikov DA,
Pain A,
Passier R,
Patrikakis M,
Persson H,
Piazza S,
Prendergast JG,
Rackham OJ,
Ramilowski JA,
Rashid M,
Ravasi T,
Rizzu P,
Roncador M,
Roy S,
Rye MB,
Saijyo E,
Sajantila A,
Saka A,
Sakaguchi S,
Sakai M,
Sato H,
Satoh H,
Savvi S,
Saxena A,
Schneider C,
Schultes EA,
Schulze-Tanzil GG,
Schwegmann A,
Sengstag T,
Sheng G,
Shimoji H,
Shimoni Y,
Shin JW,
Simon C,
Sugiyama D,
Sugiyama T,
Suzuki M,
Suzuki N,
Swoboda RK,
T Hoen PA,
Tagami M,
Tagami NT,
Takai J,
Tanaka H,
Tatsukawa H,
Tatum Z,
Thompson M,
Toyoda H,
Toyoda T,
Valen E,
Van De Wetering M,
Van Den Berg LM,
Verardo R,
Vijayan D,
Vorontsov IE,
Wasserman WW,
Watanabe S,
Wells CA,
Winteringham LN,
Wolvetang E,
Wood EJ,
Yamaguchi Y,
Yamamoto M,
Yoneda M,
Yonekura Y,
Yoshida S,
Zabierowski SE,
Zhang PG,
Zhao X,
Zucchelli S,
Summers KM,
Suzuki H,
Daub CO,
Kawai J,
Heutink P,
Hide W,
Freeman TC,
Lenhard B,
Bajic LV,
Taylor MS,
Makeev VJ,
Sandelin A,
Hume DA,
Carninci P,
Hayashizaki Y

Nature
  507 (7493): 462-470; Mar 27 2014   NLM
[DOI] [Full Text]

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
Creasey KM,
Zhai J,
Borges F,
Van Ex F,
Regulski M,
Meyers BC,
Martienssen RA

Nature
  508 (7496): 411-415; Mar 16 2014   NLM
[Abstract]
[DOI] [Full Text]

Plant MicroRNAs Display Differential 3 Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species
Zhai JX,
Zhao YY,
Simon SA,
Huang S,
Petsch K,
Arikit S,
Pillay M,
Ji LJ,
Xie M,
Cao XF,
Yu B,
Timmermans M,
Yang B,
Chen XM,
Meyers BC

Plant Cell
  25 (7): 2417-2428; Jul 2013   NOM
[Abstract]
[DOI] [Full Text]

Rare De Novo Germline Copy-Number Variation in Testicular Cancer
Stadler ZK,
Esposito D,
Shah S,
Vijai J,
Yamrom B,
Levy D,
Lee YH,
Kendall J,
Leotta A,
Ronemus M,
Hansen N,
Sarrel K,
Rau-Murthy R,
Schrader K,
Kauff N,
Klein R,
Lipkin S,
Murali R,
Robson M,
Sheinfeld J,
Feldman D,
Bosl G,
Norton L,
Wigler M,
Offit K

The American Journal of Human Genetics
  91 (2): 379-383; Aug 10 2012  
[Abstract]
[DOI] [Full Text]

Comparative population genomics of maize domestication and improvement
Hufford MB,
Xu X,
van Heerwaarden J,
Pyhajarvi T,
Chia JM,
Cartwright RA,
Elshire RJ,
Glaubitz JC,
Guill KE,
Kaeppler SM,
Lai JS,
Morrell PL,
Shannon LM,
Song C,
Springer NM,
Swanson-Wagner RA,
Tiffin P,
Wang J,
Zhang GY,
Doebley J,
McMullen MD,
Ware D,
Buckler ES,
Yang S,
Ross-Ibarra J

Nature Genetics
  44 (7): 808-811; Jul 2012  
[Abstract]
[DOI] [Full Text]

Maize HapMap2 identifies extant variation from a genome in flux
Chia JM,
Song C,
Bradbury PJ,
Costich D,
de Leon N,
Doebley J,
Elshire RJ,
Gaut B,
Geller L,
Glaubitz JC,
Gore M,
Guill KE,
Holland J,
Hufford MB,
Lai J,
Li M,
Liu X,
Lu Y,
McCombie R,
Nelson R,
Poland J,
Prasanna BM,
Pyhajarvi T,
Rong T,
Sekhon RS,
Sun Q,
Tenaillon MI,
Tian F,
Wang J,
Xu X,
Zhang Z,
Kaeppler SM,
Ross-Ibarra J,
McMullen MD,
Buckler ES,
Zhang G,
Xu Y,
Ware D

Nat Genet
  44 (7): 803-U238; Jun 3 2012   NLM
[Abstract]
[DOI] [Full Text]

Heterotypic Gap Junctions between Two Neurons in the Drosophila Brain Are Critical for Memory
Wu C,
Shih M,
Lai J,
Yang H,
Turner GC,
Chen L,
Chiang AS

Current Biology
  21 (10): 848-854; May 24 2011  
[Abstract]
[DOI]

BioMart Central Portal: an open database network for the biological community
Guberman JM,
Ai J,
Arnaiz O,
Baran J,
Blake A,
Baldock R,
Chelala C,
Croft D,
Cros A,
Cutts RJ,
Di Génova A,
Forbes S,
Fujisawa T,
Gadaleta E,
Goodstein DM,
Gundem G,
Haggarty B,
Haider S,
Hall M,
Harris T,
Haw R,
Hu S,
Hubbard S,
Hsu J,
Iyer V,
Jones P,
Katayama T,
Kinsella R,
Kong L,
Lawson D,
Liang Y,
Lopez-Bigas N,
Luo J,
Lush M,
Mason J,
Moreews F,
Ndegwa N,
Oakley D,
Perez-Llamas C,
Primig M,
Rivkin E,
Rosanoff S,
Shepherd R,
Simon R,
Skarnes B,
Smedley D,
Sperling L,
Spooner W,
Stevenson P,
Stone K,
Teague J,
Wang J,
Whitty B,
Wong DT,
Wong-Erasmus M,
Yao L,
Youens-Clark K,
Yung C,
Zhang J,
Kasprzyk A

Database : the journal of biological databases and curation
  2011 (0): 2011  
[Abstract]
[Full Text]

Heterotypic gap junctions between two mushroom body modulatory neurons are essential for Drosophila memory formation
Wu CL,
Shih MF,
Lai JS,
Yang HT,
Turner GC,
Chen LY,
Chiang AS

Journal of Neurogenetics
  24 (0): 20-21; Dec 2010   ISI
[DOI] [Full Text]

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
Plessy C,
Bertin N,
Takahashi H,
Simone R,
Salimullah M,
Lassmann T,
Vitezic M,
Severin J,
Olivarius S,
Lazarevic D,
Hornig N,
Orlando V,
Bell I,
Gao H,
Dumais J,
Kapranov P,
Wang H,
Davis CA,
Gingeras TR,
Kawai J,
Daub CO,
Hayashizaki Y,
Gustincich S,
Carninci P

Nat Meth
  (0): Jun 13 2010   PMCID: PMC2906222
[Abstract]
[DOI] [Full Text] [PDF]

Heterotopically transplanted CVO neural stem cells generate neurons and migrate with SVZ cells in the adult mouse brain
Bennett LB,
Cai J,
Enikolopov GN,
Iacovitti L

Neuroscience Letters
  (0): May 7 2010   PMC2876723
[Abstract]
[DOI] [Full Text] [PDF]

The Role of Lmx1a in the Differentiation of Human Embryonic Stem Cells into Midbrain Dopamine Neurons in Culture and After Transplantation into a Parkinsons Disease Model
Cai J,
Donaldson A,
Yang M,
German MS,
Enikolopov GN,
Iacovitti L

Stem Cells
  27 (1): 220-229; Jan 1 2009  
[Abstract]
[DOI] [Full Text] [PDF]

Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators
Mao T,
OConnor DH,
Scheuss V,
Nakai J,
Svoboda K

PLoS ONE
  3 (3): e1796; Mar 19 2008   PMCID: PMC2262942
[Abstract]
[DOI] [Full Text] [PDF]

A map of olfactory representation in the Drosophila mushroom body
Lin HH,
Lai JS,
Chin AL,
Chen YC,
Chiang AS

Cell
  128 (6): 1205-1217; Mar 2007  
[Abstract]
[DOI] [Full Text] [PDF]

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Birney E,
Stamatoyannopoulos JA,
Dutta A,
Guigó R,
Gingeras TR,
Margulies EH,
Weng Z,
Snyder M,
Dermitzakis ET,
Thurman RE,
Kuehn MS,
Taylor CM,
Neph S,
Koch CM,
Asthana S,
Malhotra A,
Adzhubei I,
Greenbaum JA,
Andrews RM,
Flicek P,
Boyle PJ,
Cao H,
Carter NP,
Clelland GK,
Davis S,
Day N,
Dhami P,
Dillon SC,
Dorschner MO,
Fiegler H,
Giresi PG,
Goldy J,
Hawrylycz M,
Haydock A,
Humbert R,
James KD,
Johnson BE,
Johnson EM,
Frum TT,
Rosenzweig ER,
Karnani N,
Lee K,
Lefebvre GC,
Navas PA,
Neri F,
Parker SC,
Sabo PJ,
Sandstrom R,
Shafer A,
Vetrie D,
Weaver M,
Wilcox S,
Yu M,
Collins FS,
Dekker J,
Lieb JD,
Tullius TD,
Crawford GE,
Sunyaev S,
Noble WS,
Dunham I,
Denoeud F,
Reymond A,
Kapranov P,
Rozowsky J,
Zheng D,
Castelo R,
Frankish A,
Harrow J,
Ghosh S,
Sandelin A,
Hofacker IL,
Baertsch R,
Keefe D,
Dike S,
Cheng J,
Hirsch HA,
Sekinger EA,
Lagarde J,
Abril JF,
Shahab A,
Flamm C,
Fried C,
Hackermüller J,
Hertel J,
Lindemeyer M,
Missal K,
Tanzer A,
Washietl S,
Korbel J,
Emanuelsson O,
Pedersen JS,
Holroyd N,
Taylor R,
Swarbreck D,
Matthews N,
Dickson MC,
Thomas DJ,
Weirauch MT,
Gilbert J,
Drenkow J,
Bell I,
Zhao X,
Srinivasan KG,
Sung WK,
Ooi HS,
Chiu KP,
Foissac S,
Alioto T,
Brent M,
Pachter L,
Tress ML,
Valencia A,
Choo SW,
Choo CY,
Ucla C,
Manzano C,
Wyss C,
Cheung E,
Clark TG,
Brown JB,
Ganesh M,
Patel S,
Tammana H,
Chrast J,
Henrichsen CN,
Kai C,
Kawai J,
Nagalakshmi U,
Wu J,
Lian Z,
Lian J,
Newburger P,
Zhang X,
Bickel P,
Mattick JS,
Carninci P,
Hayashizaki Y,
Weissman S,
Hubbard T,
Myers RM,
Rogers J,
Stadler PF,
Lowe TM,
Wei CL,
Ruan Y,
Struhl K,
Gerstein M,
Antonarakis SE,
Fu Y,
Green ED,
Karaöz U,
Siepel A,
Taylor J,
Liefer LA,
Wetterstrand KA,
Good PJ,
Feingold EA,
Guyer MS,
Cooper GM,
Asimenos G,
Dewey CN,
Hou M,
Nikolaev S,
Montoya-Burgos JI,
Löytynoja A,
Whelan S,
Pardi F,
Massingham T,
Huang H,
Zhang NR,
Holmes I,
Mullikin JC,
Ureta-Vidal A,
Paten B,
Seringhaus M,
Church D,
Rosenbloom K,
Kent WJ,
Stone EA,
Batzoglou S,
Goldman N,
Hardison RC,
Haussler D,
Miller W,
Sidow A,
Trinklein ND,
Zhang ZD,
Barrera L,
Stuart R,
King DC,
Ameur A,
Enroth S,
Bieda MC,
Kim J,
Bhinge AA,
Jiang N,
Liu J,
Yao F,
Vega VB,
Lee CW,
Ng P,
Yang A,
Moqtaderi Z,
Zhu Z,
Xu X,
Squazzo S,
Oberley MJ,
Inman D,
Singer MA,
Richmond TA,
Munn KJ,
Rada-Iglesias A,
Wallerman O,
Komorowski J,
Fowler JC,
Couttet P,
Bruce AW,
Dovey OM,
Ellis PD,
Langford CF,
Nix DA,
Euskirchen G,
Hartman S,
Urban AE,
Kraus P,
Van Calcar S,
Heintzman N,
Hoon Kim T,
Wang K,
Qu C,
Hon G,
Luna R,
Glass CK,
Rosenfeld MG,
Aldred SF,
Cooper SJ,
Halees A,
Lin JM,
Shulha HP,
Xu M,
Haidar JN,
Yu Y,
Iyer VR,
Green RD,
Wadelius C,
Farnham PJ,
Ren B,
Harte RA,
Hinrichs AS,
Trumbower H,
Clawson H,
Hillman-Jackson J,
Zweig AS,
Smith K,
Thakkapallayil A,
Barber G,
Kuhn RM,
Karolchik D,
Armengol L,
Bird CP,
De Bakker PI,
Kern AD,
Lopez-Bigas N,
Martin JD,
Stranger BE,
Woodroffe A,
Davydov E,
Dimas A,
Eyras E,
Hallgrímsdóttir IB,
Huppert J,
Zody MC,
Abecasis GR,
Estivill X,
Bouffard GG,
Guan X,
Hansen NF,
Idol JR,
Maduro VV,
Maskeri B,
McDowell JC,
Park M,
Thomas PJ,
Young AC,
Blakesley RW,
Muzny DM,
Sodergren E,
Wheeler DA,
Worley KC,
Jiang H,
Weinstock GM,
Gibbs RA,
Graves T,
Fulton R,
Mardis ER,
Wilson RK,
Clamp M,
Cuff J,
Gnerre S,
Jaffe DB,
Chang JL,
Lindblad-Toh K,
Lander ES,
Koriabine M,
Nefedov M,
Osoegawa K,
Yoshinaga Y,
Zhu B,
De Jong PJ

Nature
  447 (7146): 799-816; 2007  
[Abstract]
[DOI] [Full Text]

The transcriptional landscape of the mammalian genome
Carninci P,
Kasukawa T,
Katayama S,
Gough J,
Frith MC,
Maeda N,
Oyama R,
Ravasi T,
Lenhard B,
Wells C,
Kodzius R,
Shimokawa K,
Bajic VB,
Brenner SE,
Batalov S,
Forrest AR,
Zavolan M,
Davis MJ,
Wilming LG,
Aidinis V,
Allen JE,
Ambesi-Impiombato A,
Apweiler R,
Aturaliya RN,
Bailey TL,
Bansal M,
Baxter L,
Beisel KW,
Bersano T,
Bono H,
Chalk AM,
Chiu KP,
Choudhary V,
Christoffels A,
Clutterbuck DR,
Crowe ML,
Dalla E,
Dalrymple BP,
de Bono B,
della Gatta G,
di Bernardo D,
Down T,
Engstrom P,
Fagiolini M,
Faulkner G,
Fletcher CF,
Fukushima T,
Furuno M,
Futaki S,
Gariboldi M,
Georgii-Hemming P,
Gingeras TR,
Gojobori T,
Green RE,
Gustincich S,
Harbers M,
Hayashi Y,
Hensch TK,
Hirokawa N,
Hill D,
Huminiecki L,
Iacono M,
Ikeo K,
Iwama A,
Ishikawa T,
Jakt M,
Kanapin A,
Katoh M,
Kawasawa Y,
Kelso J,
Kitamura H,
Kitano H,
Kollias G,
Krishnan SP,
Kruger AF,
Kummerfeld SK,
Kurochkin IV,
Lareau LF,
Lazarevic D,
Lipovich L,
Liu J,
Liuni S,
McWilliam S,
Madan Babu M,
Madera M,
Marchionni L,
Matsuda H,
Matsuzawa S,
Miki H,
Mignone F,
Miyake S,
Morris K,
Mottagui-Tabar S,
Mulder N,
Nakano N,
Nakauchi H,
Ng P,
Nilsson R,
Nishiguchi S,
Nishikawa S,
Nori F,
Ohara O,
Okazaki Y,
Orlando V,
Pang KC,
Pavan WJ,
Pavesi G,
Pesole G,
Petrovsky N,
Piazza S,
Reed J,
Reid JF,
Ring BZ,
Ringwald M,
Rost B,
Ruan Y,
Salzberg SL,
Sandelin A,
Schneider C,
Schönbach C,
Sekiguchi K,
Semple CA,
Seno S,
Sessa L,
Sheng Y,
Shibata Y,
Shimada H,
Shimada K,
Silva D,
Sinclair B,
Sperling S,
Stupka E,
Sugiura K,
Sultana R,
Takenaka Y,
Taki K,
Tammoja K,
Tan SL,
Tang S,
Taylor MS,
Tegner J,
Teichmann SA,
Ueda HR,
van Nimwegene E,
Verardo R,
Wei CL,
Yagi K,
Yamanishi H,
Zabarovsky E,
Zhu S,
Zimmer A,
Hide W,
Bult C,
Grimmond SM,
Teasdale RD,
Liu ET,
Brusic V,
Quackenbush J,
Wahlestedt C,
Mattick JS,
Hume DA,
Kai C,
Sasaki D,
Tomaru Y,
Fukuda S,
Kanamori-Katayama M,
Suzuki M,
Aoki J,
Arakawa T,
Iida J,
Imamura K,
Itoh M,
Kato T,
Kawaji H,
Kawagashira N,
Kawashima T,
Kojima M,
Kondo S,
Konno H,
Nakano K,
Ninomiya N,
Nishio T,
Okada M,
Plessy C,
Shibata K,
Shiraki T,
Suzuki S,
Tagami M,
Waki K,
Watahiki A,
Okamura-Oho Y,
Suzuki H,
Kawai J,
Hayashizaki Y

Science
  309 (5740): 1559-1563; 2005  
[Abstract]
[Full Text]

Initial sequencing and comparative analysis of the mouse genome
Waterston RH,
Lindblad-Toh K,
Birney E,
Rogers J,
Abril JF,
Agarwal P,
Agarwala R,
Ainscough R,
Alexandersson M,
An P,
Antonarakis SE,
Attwood J,
Baertsch R,
Bailey J,
Barlow K,
Beck S,
Berry E,
Birren B,
Bloom T,
Bork P,
Botcherby M,
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Cold Spring Harb Symp Quant Biol
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